miRNA display CGI


Results 21 - 40 of 535 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14136 3' -63.3 NC_003521.1 + 224921 0.67 0.629862
Target:  5'- gGGCuCGUaGauguacaGGC-GCGuGCUGCCGCCCa -3'
miRNA:   3'- -UCGuGCA-Cg------CCGaUGC-CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 224753 0.68 0.573386
Target:  5'- cAGCGCGUcGgGGCUcCGGCaguugugcaGCagCGCCCg -3'
miRNA:   3'- -UCGUGCA-CgCCGAuGCCGg--------CG--GCGGG- -5'
14136 3' -63.3 NC_003521.1 + 224602 0.66 0.695699
Target:  5'- cGCACucggccagGCGGCa--GGgCGCCGCCa -3'
miRNA:   3'- uCGUGca------CGCCGaugCCgGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 224089 0.66 0.695699
Target:  5'- gGGCGCGcGCGccgGCGGUCGCCGaaCUCg -3'
miRNA:   3'- -UCGUGCaCGCcgaUGCCGGCGGC--GGG- -5'
14136 3' -63.3 NC_003521.1 + 224023 0.69 0.52724
Target:  5'- gGGCcCG-GCGGUcgggGCGggcGCCGUCGCCCc -3'
miRNA:   3'- -UCGuGCaCGCCGa---UGC---CGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 223836 0.68 0.610968
Target:  5'- gGGCGCcUGCuGUcccUGCGGCUGCUGCUg -3'
miRNA:   3'- -UCGUGcACGcCG---AUGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 223736 0.67 0.658199
Target:  5'- gGGUcCGgugGCGGgaACgugGGUCGCCGCCa -3'
miRNA:   3'- -UCGuGCa--CGCCgaUG---CCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 223404 0.66 0.714205
Target:  5'- gGGC-CGUGUGGCgcccCGGCgCGgCGUCa -3'
miRNA:   3'- -UCGuGCACGCCGau--GCCG-GCgGCGGg -5'
14136 3' -63.3 NC_003521.1 + 223091 0.66 0.694768
Target:  5'- cAGCgaACGUGCGuagaucuGCgggAUGGCgGCCGUCUc -3'
miRNA:   3'- -UCG--UGCACGC-------CGa--UGCCGgCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 223000 0.69 0.518169
Target:  5'- uGGUAUG-GCGGUgGgGGUCGUCGUCCg -3'
miRNA:   3'- -UCGUGCaCGCCGaUgCCGGCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 222000 0.68 0.592127
Target:  5'- gGGCAUGUGCGGCguggGCGGgaaGCacuugGCCa -3'
miRNA:   3'- -UCGUGCACGCCGa---UGCCgg-CGg----CGGg -5'
14136 3' -63.3 NC_003521.1 + 221710 0.67 0.658199
Target:  5'- gAGCACGcaGUGG-UACGuGCCGgCCGUCUg -3'
miRNA:   3'- -UCGUGCa-CGCCgAUGC-CGGC-GGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 221624 0.66 0.714205
Target:  5'- cGCAauCGUGCauGGCcuuaGCuCGCCGCCCg -3'
miRNA:   3'- uCGU--GCACG--CCGaugcCG-GCGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 220194 0.66 0.690109
Target:  5'- cAGCGCGcgGCucuccgagcacaucuGGaagAUGGCCGCCGUCa -3'
miRNA:   3'- -UCGUGCa-CG---------------CCga-UGCCGGCGGCGGg -5'
14136 3' -63.3 NC_003521.1 + 218629 0.71 0.415161
Target:  5'- cGCGCGgcgguaaGCGGCcACGGCCgGCgGCgCCu -3'
miRNA:   3'- uCGUGCa------CGCCGaUGCCGG-CGgCG-GG- -5'
14136 3' -63.3 NC_003521.1 + 218394 0.73 0.332583
Target:  5'- aAGCGCGgGCGGUacuCGGCCacGCCGCgCa -3'
miRNA:   3'- -UCGUGCaCGCCGau-GCCGG--CGGCGgG- -5'
14136 3' -63.3 NC_003521.1 + 217333 0.76 0.224781
Target:  5'- cAGCACG-GUGGCggACGGCgGCCgGUCCu -3'
miRNA:   3'- -UCGUGCaCGCCGa-UGCCGgCGG-CGGG- -5'
14136 3' -63.3 NC_003521.1 + 216912 0.66 0.686375
Target:  5'- gGGCGCG-GUGGCaGCggaGGCgGUCGaCCCc -3'
miRNA:   3'- -UCGUGCaCGCCGaUG---CCGgCGGC-GGG- -5'
14136 3' -63.3 NC_003521.1 + 216613 0.68 0.610968
Target:  5'- cGCugGUGCuGCUguuggacgACGuuccGCCcauGCCGCCCg -3'
miRNA:   3'- uCGugCACGcCGA--------UGC----CGG---CGGCGGG- -5'
14136 3' -63.3 NC_003521.1 + 216121 0.66 0.732472
Target:  5'- gAGCGCGgcGCGGa---GGCCGCgGCa- -3'
miRNA:   3'- -UCGUGCa-CGCCgaugCCGGCGgCGgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.