Results 21 - 40 of 535 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14136 | 3' | -63.3 | NC_003521.1 | + | 197340 | 0.74 | 0.286646 |
Target: 5'- uGGC-CGccGCGGCcagcACGGCCGCCGCgCu -3' miRNA: 3'- -UCGuGCa-CGCCGa---UGCCGGCGGCGgG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 110680 | 0.74 | 0.274473 |
Target: 5'- uAGCGCucggugGCGGCaGCGGCggCGCCGCCg -3' miRNA: 3'- -UCGUGca----CGCCGaUGCCG--GCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 137578 | 0.76 | 0.21483 |
Target: 5'- uGCACGcGCGaaccguuauuCUugGGCCGCCGCCUg -3' miRNA: 3'- uCGUGCaCGCc---------GAugCCGGCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 110471 | 0.78 | 0.148133 |
Target: 5'- cGCACG-GCGcCUGCGGCCGCacguugaGCCCg -3' miRNA: 3'- uCGUGCaCGCcGAUGCCGGCGg------CGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 209118 | 0.73 | 0.332583 |
Target: 5'- cAGCACGcGCacaUGCuGCCGCCGCCCc -3' miRNA: 3'- -UCGUGCaCGccgAUGcCGGCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 75063 | 0.73 | 0.312259 |
Target: 5'- cGGCACGaUGaugGGCaaGCcGCCGCCGCCCu -3' miRNA: 3'- -UCGUGC-ACg--CCGa-UGcCGGCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 114248 | 0.75 | 0.256995 |
Target: 5'- cGGCACGacgGCGGCUuc--CCGCUGCCCa -3' miRNA: 3'- -UCGUGCa--CGCCGAugccGGCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 96531 | 0.79 | 0.13794 |
Target: 5'- cAGCGCGUGCGGCagcaGCGaGUCGCCgugcucGCCCa -3' miRNA: 3'- -UCGUGCACGCCGa---UGC-CGGCGG------CGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 117192 | 0.74 | 0.30181 |
Target: 5'- uGCGC-UGCGcaucaucacgccgcuGCUACGGCgGCUGCCCc -3' miRNA: 3'- uCGUGcACGC---------------CGAUGCCGgCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 116362 | 0.79 | 0.128394 |
Target: 5'- gAGCGCG-GCGGCgaacGCGuGCCGCCgcgGCCCa -3' miRNA: 3'- -UCGUGCaCGCCGa---UGC-CGGCGG---CGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 76360 | 0.75 | 0.262717 |
Target: 5'- cGGCgGCGgcaGCGGCgaccgugACGGCCGCgGCCg -3' miRNA: 3'- -UCG-UGCa--CGCCGa------UGCCGGCGgCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 154591 | 0.74 | 0.292261 |
Target: 5'- uGCACGUcaaggagcucaagGCcGCcgGCGuGCCGCCGCCCu -3' miRNA: 3'- uCGUGCA-------------CGcCGa-UGC-CGGCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 155147 | 0.75 | 0.240438 |
Target: 5'- cGGCGCGUGCuggacgccGGCUcggaacagcugGCGGCCGCgGCUg -3' miRNA: 3'- -UCGUGCACG--------CCGA-----------UGCCGGCGgCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 34631 | 0.76 | 0.219758 |
Target: 5'- aAGCugGUGauCGuGCUcGCGGCCcugGCCGCCCu -3' miRNA: 3'- -UCGugCAC--GC-CGA-UGCCGG---CGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 240700 | 0.78 | 0.170598 |
Target: 5'- cGUACGUGUuucugcacGGCUcCGGCCGCCGCUUc -3' miRNA: 3'- uCGUGCACG--------CCGAuGCCGGCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 179576 | 0.78 | 0.148133 |
Target: 5'- aGGCGCGUGUGGCgaaugaaguucUGCaGGCUGCCGCUg -3' miRNA: 3'- -UCGUGCACGCCG-----------AUG-CCGGCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 167674 | 0.72 | 0.353863 |
Target: 5'- aGGC-CGagGCGGCgccGCcGCCGCUGCCCc -3' miRNA: 3'- -UCGuGCa-CGCCGa--UGcCGGCGGCGGG- -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 181191 | 0.72 | 0.346664 |
Target: 5'- cGCACcaacgccUGCGaGCcGCGGUCGCCGCCg -3' miRNA: 3'- uCGUGc------ACGC-CGaUGCCGGCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 104086 | 0.73 | 0.325702 |
Target: 5'- gGGCGCGgcaggacGCGGaagGCGGCgCGCUGCCa -3' miRNA: 3'- -UCGUGCa------CGCCga-UGCCG-GCGGCGGg -5' |
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14136 | 3' | -63.3 | NC_003521.1 | + | 174452 | 0.73 | 0.312259 |
Target: 5'- cGCugGUGUcGCUGCucGCCGCCGgCCa -3' miRNA: 3'- uCGugCACGcCGAUGc-CGGCGGCgGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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