miRNA display CGI


Results 21 - 40 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 3' -54.5 NC_003521.1 + 143986 0.74 0.678985
Target:  5'- gCC-CCAUGcCGCUGcaGAAGCUGGUGGUg -3'
miRNA:   3'- -GGaGGUACuGCGAC--UUUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 109161 0.74 0.695804
Target:  5'- uCCUCCAgcgaGAUGUUGAAGGCCGccacgaugggucgcGUGGUg -3'
miRNA:   3'- -GGAGGUa---CUGCGACUUUCGGU--------------CGCCG- -5'
14140 3' -54.5 NC_003521.1 + 167447 0.74 0.708568
Target:  5'- aCUCggaCAUGACgaugagcguGCUGAGGGCCGugcGCGGCg -3'
miRNA:   3'- gGAG---GUACUG---------CGACUUUCGGU---CGCCG- -5'
14140 3' -54.5 NC_003521.1 + 17353 0.74 0.708568
Target:  5'- cCCgggCCGUGACGCc---GGCgCGGCGGCc -3'
miRNA:   3'- -GGa--GGUACUGCGacuuUCG-GUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 42550 0.74 0.718317
Target:  5'- uCCUCCGcGACGCccggcUGGcuGuCCGGCGGCc -3'
miRNA:   3'- -GGAGGUaCUGCG-----ACUuuC-GGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 190963 0.74 0.718317
Target:  5'- gCCaUCAUGAgcaUGCUGGAcgaGGCCgAGCGGCa -3'
miRNA:   3'- -GGaGGUACU---GCGACUU---UCGG-UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 151596 0.73 0.727995
Target:  5'- gUCUCC---GCGCUGGAGGUCGGcCGGUg -3'
miRNA:   3'- -GGAGGuacUGCGACUUUCGGUC-GCCG- -5'
14140 3' -54.5 NC_003521.1 + 115832 0.73 0.727995
Target:  5'- gCUCagcaGGCGCUGGcucAGGCgGGCGGCg -3'
miRNA:   3'- gGAGgua-CUGCGACU---UUCGgUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 193709 0.73 0.727995
Target:  5'- aCCUCCAcGACuGCgucuacGAGCUGGCGGCc -3'
miRNA:   3'- -GGAGGUaCUG-CGacu---UUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 196569 0.73 0.737593
Target:  5'- uCCUCCggcGUGACGCcGGAcucccgcGCaCGGCGGCa -3'
miRNA:   3'- -GGAGG---UACUGCGaCUUu------CG-GUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 225963 0.73 0.737594
Target:  5'- aCUCCGUcACGCUGuuGGCCAcGCGccGCa -3'
miRNA:   3'- gGAGGUAcUGCGACuuUCGGU-CGC--CG- -5'
14140 3' -54.5 NC_003521.1 + 17758 0.73 0.746157
Target:  5'- gCCUCCgaguaucugugcuGUGACGaugacCUGGAGGCCGuCGGCg -3'
miRNA:   3'- -GGAGG-------------UACUGC-----GACUUUCGGUcGCCG- -5'
14140 3' -54.5 NC_003521.1 + 111584 0.73 0.756518
Target:  5'- -aUCCAggUGcCGCgcguGGCCAGCGGCg -3'
miRNA:   3'- ggAGGU--ACuGCGacuuUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 98447 0.73 0.756518
Target:  5'- gCCUCCuggGcuACGUUGGAGGaggCGGCGGCg -3'
miRNA:   3'- -GGAGGua-C--UGCGACUUUCg--GUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 99179 0.73 0.756519
Target:  5'- uUCUCCGgccugGGgGCUGAAGG-UGGCGGCg -3'
miRNA:   3'- -GGAGGUa----CUgCGACUUUCgGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 75752 0.73 0.765827
Target:  5'- gCUCCuUGACGCUGuAGGgCAGaaaGGCc -3'
miRNA:   3'- gGAGGuACUGCGACuUUCgGUCg--CCG- -5'
14140 3' -54.5 NC_003521.1 + 123054 0.73 0.765827
Target:  5'- gCCaCCAUGcUGCUGGGAcGgCGGCGGCg -3'
miRNA:   3'- -GGaGGUACuGCGACUUU-CgGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 228291 0.73 0.765827
Target:  5'- uCCUCCAcGGCGaagugGAAAcGCCGGcCGGCc -3'
miRNA:   3'- -GGAGGUaCUGCga---CUUU-CGGUC-GCCG- -5'
14140 3' -54.5 NC_003521.1 + 166648 0.73 0.765827
Target:  5'- gCCgggcgCCGcGGCGCagc-GGCCAGCGGCa -3'
miRNA:   3'- -GGa----GGUaCUGCGacuuUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 179245 0.73 0.775023
Target:  5'- gCCUUC-UGGCGcCUGAAcucgccGGCCAGCaGCg -3'
miRNA:   3'- -GGAGGuACUGC-GACUU------UCGGUCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.