miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 3' -54.5 NC_003521.1 + 110799 1.13 0.003733
Target:  5'- cCCUCCAUGACGCUGAAAGCCAGCGGCc -3'
miRNA:   3'- -GGAGGUACUGCGACUUUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 138814 0.82 0.303868
Target:  5'- cCCUCCAUGGCGCgccUGAuGG-CGGCGGCu -3'
miRNA:   3'- -GGAGGUACUGCG---ACUuUCgGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 164683 0.82 0.324996
Target:  5'- aCC-CCGUGACGac-GAGGCCGGCGGCu -3'
miRNA:   3'- -GGaGGUACUGCgacUUUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 103207 0.81 0.36259
Target:  5'- gCUCCAUGAC-CUGGAugaggucgccGGCCAgGCGGCg -3'
miRNA:   3'- gGAGGUACUGcGACUU----------UCGGU-CGCCG- -5'
14140 3' -54.5 NC_003521.1 + 75245 0.79 0.455316
Target:  5'- cCCUUCAUGcACGCcgagGAGGGCCGGCuGCa -3'
miRNA:   3'- -GGAGGUAC-UGCGa---CUUUCGGUCGcCG- -5'
14140 3' -54.5 NC_003521.1 + 177287 0.78 0.464371
Target:  5'- gCUCCGUGACGCUGGGc-CCAG-GGCu -3'
miRNA:   3'- gGAGGUACUGCGACUUucGGUCgCCG- -5'
14140 3' -54.5 NC_003521.1 + 151808 0.78 0.482758
Target:  5'- aCCgCCGUGGCGCcGGugGGGCCcGCGGCa -3'
miRNA:   3'- -GGaGGUACUGCGaCU--UUCGGuCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 77225 0.77 0.559407
Target:  5'- uUCUCCAgcgUGACGCUGuAGAcGUCGGCGGg -3'
miRNA:   3'- -GGAGGU---ACUGCGAC-UUU-CGGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 7667 0.77 0.559407
Target:  5'- --gCCA-GACGCUG-AAGCCGGCGGg -3'
miRNA:   3'- ggaGGUaCUGCGACuUUCGGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 224080 0.76 0.56926
Target:  5'- uCCUCCGgcgGGCGCgcgc-GCCGGCGGUc -3'
miRNA:   3'- -GGAGGUa--CUGCGacuuuCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 76392 0.76 0.56926
Target:  5'- gCCgCgGUGGCGCUGcuAGCacCAGCGGCg -3'
miRNA:   3'- -GGaGgUACUGCGACuuUCG--GUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 188428 0.76 0.579156
Target:  5'- uCCUCCGcGACGaaGAAGGCCGcGaCGGCg -3'
miRNA:   3'- -GGAGGUaCUGCgaCUUUCGGU-C-GCCG- -5'
14140 3' -54.5 NC_003521.1 + 167734 0.76 0.589087
Target:  5'- aUUgCGUGGCGCUGcgguGGCCGGCGGa -3'
miRNA:   3'- gGAgGUACUGCGACuu--UCGGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 103318 0.76 0.599049
Target:  5'- aCUCCAgcaGGCGCUGAcgcGCCAGCGccguGCg -3'
miRNA:   3'- gGAGGUa--CUGCGACUuu-CGGUCGC----CG- -5'
14140 3' -54.5 NC_003521.1 + 22390 0.76 0.609034
Target:  5'- uCCUCCGUGGugccgcCGCUGucgcuGGCCAugcugcGCGGCg -3'
miRNA:   3'- -GGAGGUACU------GCGACuu---UCGGU------CGCCG- -5'
14140 3' -54.5 NC_003521.1 + 86157 0.75 0.619036
Target:  5'- gCUCCAgcgucuCGCUGccggccucGGCCAGCGGCa -3'
miRNA:   3'- gGAGGUacu---GCGACuu------UCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 118261 0.75 0.639061
Target:  5'- gCC-CCGUGACGCU---AGCCAugaucuGCGGCg -3'
miRNA:   3'- -GGaGGUACUGCGAcuuUCGGU------CGCCG- -5'
14140 3' -54.5 NC_003521.1 + 196386 0.75 0.649069
Target:  5'- gCCUCCu--GCGUggUGAAGGgCGGCGGCa -3'
miRNA:   3'- -GGAGGuacUGCG--ACUUUCgGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 125404 0.75 0.649069
Target:  5'- cCCgcgCCGcGGCGCUGAguccggAGGCCguGGCGGCc -3'
miRNA:   3'- -GGa--GGUaCUGCGACU------UUCGG--UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 37442 0.75 0.659064
Target:  5'- gCCUCUgaagGUGACGCUGugGGCUcGCGcGCg -3'
miRNA:   3'- -GGAGG----UACUGCGACuuUCGGuCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.