miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 3' -54.5 NC_003521.1 + 218007 0.66 0.979095
Target:  5'- --aUgAUGACGCUGAugAAGaCCccguucuugGGCGGCg -3'
miRNA:   3'- ggaGgUACUGCGACU--UUC-GG---------UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 219180 0.66 0.981211
Target:  5'- gUUCCAgUGGCgGCUGAgccccAGGCCcaugauGGCGGUc -3'
miRNA:   3'- gGAGGU-ACUG-CGACU-----UUCGG------UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 26738 0.66 0.984957
Target:  5'- -gUCC-UGACGCccgUGAuguGGUCGGCGcGCu -3'
miRNA:   3'- ggAGGuACUGCG---ACUu--UCGGUCGC-CG- -5'
14140 3' -54.5 NC_003521.1 + 100875 0.66 0.978874
Target:  5'- gCUCCAUGcUGCUGcgucgacugauaaGAAGUCGGCGa- -3'
miRNA:   3'- gGAGGUACuGCGAC-------------UUUCGGUCGCcg -5'
14140 3' -54.5 NC_003521.1 + 42191 0.66 0.976807
Target:  5'- aCagCAcGGCGUUucccuGGGCCAGCGGCu -3'
miRNA:   3'- gGagGUaCUGCGAcu---UUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 83681 0.66 0.979095
Target:  5'- aCCUCgcgCGUGACGUUGuggacgcGCgAGCGGg -3'
miRNA:   3'- -GGAG---GUACUGCGACuuu----CGgUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 76701 0.66 0.97434
Target:  5'- -gUCCGUGuaGCGgUGGca-CCGGCGGCg -3'
miRNA:   3'- ggAGGUAC--UGCgACUuucGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 118745 0.66 0.97434
Target:  5'- gCUgCAgguUGCUGGuGAGUCGGCGGCc -3'
miRNA:   3'- gGAgGUacuGCGACU-UUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 19035 0.66 0.97434
Target:  5'- -aUCgAgcgGACGCUG-GAGCUucgaggacGGCGGCg -3'
miRNA:   3'- ggAGgUa--CUGCGACuUUCGG--------UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 65690 0.66 0.97434
Target:  5'- gCUUCCggGACcagGCaaGAAGGaCAGCGGCg -3'
miRNA:   3'- -GGAGGuaCUG---CGa-CUUUCgGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 130282 0.66 0.981211
Target:  5'- cCCUCUccGGCuacCUGGgcgAGGCC-GCGGCg -3'
miRNA:   3'- -GGAGGuaCUGc--GACU---UUCGGuCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 117204 0.66 0.97434
Target:  5'- cCCgaggCgGUGGagaugucgcaccCGCUGAcGGCCgcGGCGGCu -3'
miRNA:   3'- -GGa---GgUACU------------GCGACUuUCGG--UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 200317 0.66 0.979095
Target:  5'- gCCggCCGgucgGACGUguuucGGGCCGGCGGg -3'
miRNA:   3'- -GGa-GGUa---CUGCGacu--UUCGGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 152605 0.66 0.979095
Target:  5'- gCCUCCucGGCGCccugGuuGGUCaccaGGCGGCg -3'
miRNA:   3'- -GGAGGuaCUGCGa---CuuUCGG----UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 44725 0.66 0.981211
Target:  5'- -aUCCugGUGACGCUGAuccgGGGUCuGCaGCu -3'
miRNA:   3'- ggAGG--UACUGCGACU----UUCGGuCGcCG- -5'
14140 3' -54.5 NC_003521.1 + 154458 0.66 0.97434
Target:  5'- cCUUCCGc-ACGCUGuuGGUCAcCGGCa -3'
miRNA:   3'- -GGAGGUacUGCGACuuUCGGUcGCCG- -5'
14140 3' -54.5 NC_003521.1 + 141093 0.66 0.97434
Target:  5'- cCCUCC-UGugGCUGcucuaCuGCGGCc -3'
miRNA:   3'- -GGAGGuACugCGACuuucgGuCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 202992 0.66 0.979095
Target:  5'- cCCUCCGgacgGACGaC-GAGAGCUGGUGuccGCa -3'
miRNA:   3'- -GGAGGUa---CUGC-GaCUUUCGGUCGC---CG- -5'
14140 3' -54.5 NC_003521.1 + 216820 0.66 0.981211
Target:  5'- aCgCCGgaUGGCGCgcagGAGgucgcAGCCcGCGGCg -3'
miRNA:   3'- gGaGGU--ACUGCGa---CUU-----UCGGuCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 61269 0.66 0.97434
Target:  5'- gCCUCUGuuacugcuUGGCGCUGA--GCC-GCGcGCa -3'
miRNA:   3'- -GGAGGU--------ACUGCGACUuuCGGuCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.