miRNA display CGI


Results 1 - 20 of 320 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 3' -54.5 NC_003521.1 + 87 0.7 0.900334
Target:  5'- gCUUgCCGcgGGCGUgcagGGAGGCCgaAGCGGCg -3'
miRNA:   3'- -GGA-GGUa-CUGCGa---CUUUCGG--UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 89 0.66 0.979095
Target:  5'- gCCggCCGgucgGACGUguuucGGGCCGGCGGg -3'
miRNA:   3'- -GGa-GGUa---CUGCGacu--UUCGGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 415 0.67 0.965487
Target:  5'- aCUgcagCUGUG-UGCUGGcgaggccAAGCCGGCGGUa -3'
miRNA:   3'- -GGa---GGUACuGCGACU-------UUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 949 0.69 0.92879
Target:  5'- gCCgagCCAUGcgcaaguggGCGCaacGAGAgGCCGGCGGUc -3'
miRNA:   3'- -GGa--GGUAC---------UGCGa--CUUU-CGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 3361 0.68 0.955439
Target:  5'- uCCUCCGUGAaGCUGA----CGGUGGUc -3'
miRNA:   3'- -GGAGGUACUgCGACUuucgGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 3885 0.66 0.976806
Target:  5'- uUCUUCAUaGCGCcGuAGGCUcGCGGCa -3'
miRNA:   3'- -GGAGGUAcUGCGaCuUUCGGuCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 4331 0.67 0.965802
Target:  5'- aCCgUCCAugccUGGCGCcaccgccGCCGGCGGUu -3'
miRNA:   3'- -GG-AGGU----ACUGCGacuuu--CGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 7667 0.77 0.559407
Target:  5'- --gCCA-GACGCUG-AAGCCGGCGGg -3'
miRNA:   3'- ggaGGUaCUGCGACuUUCGGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 7867 0.66 0.979095
Target:  5'- gCCUCCAUGGgGaUGAGcuCCAGCaGGa -3'
miRNA:   3'- -GGAGGUACUgCgACUUucGGUCG-CCg -5'
14140 3' -54.5 NC_003521.1 + 7951 0.7 0.893967
Target:  5'- uCCUCCAgaucgccgcggUGuCGCggccggGAGGGUCcGCGGCg -3'
miRNA:   3'- -GGAGGU-----------ACuGCGa-----CUUUCGGuCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 8023 0.67 0.965802
Target:  5'- gCUCCAgaccgccggaGGCGUUGAGAaCCAGCuGCu -3'
miRNA:   3'- gGAGGUa---------CUGCGACUUUcGGUCGcCG- -5'
14140 3' -54.5 NC_003521.1 + 8400 0.66 0.984957
Target:  5'- aCCUCCGacacgcaGGCGCUGGcguuGCCGugccGCaGGCg -3'
miRNA:   3'- -GGAGGUa------CUGCGACUuu--CGGU----CG-CCG- -5'
14140 3' -54.5 NC_003521.1 + 14426 0.66 0.984957
Target:  5'- gCCUaUCGUGACGUggUGcacacGGCCcugcGGCGGCg -3'
miRNA:   3'- -GGA-GGUACUGCG--ACuu---UCGG----UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 14914 0.7 0.900333
Target:  5'- gUUCCGUcaccGGCGCUucGAgcGCgAGCGGCa -3'
miRNA:   3'- gGAGGUA----CUGCGA--CUuuCGgUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 15502 0.7 0.887381
Target:  5'- uCCUCCuucuccGGCGCUcgGGuuGgCGGCGGCa -3'
miRNA:   3'- -GGAGGua----CUGCGA--CUuuCgGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 17353 0.74 0.708568
Target:  5'- cCCgggCCGUGACGCc---GGCgCGGCGGCc -3'
miRNA:   3'- -GGa--GGUACUGCGacuuUCG-GUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 17758 0.73 0.746157
Target:  5'- gCCUCCgaguaucugugcuGUGACGaugacCUGGAGGCCGuCGGCg -3'
miRNA:   3'- -GGAGG-------------UACUGC-----GACUUUCGGUcGCCG- -5'
14140 3' -54.5 NC_003521.1 + 18713 0.72 0.810498
Target:  5'- -aUCCGgcUGugGCUGcc-GCUGGCGGCg -3'
miRNA:   3'- ggAGGU--ACugCGACuuuCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 19035 0.66 0.97434
Target:  5'- -aUCgAgcgGACGCUG-GAGCUucgaggacGGCGGCg -3'
miRNA:   3'- ggAGgUa--CUGCGACuUUCGG--------UCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 20623 0.66 0.97434
Target:  5'- uCUUCCA-GAUGUgcucgGAGAGCC-GCGcGCu -3'
miRNA:   3'- -GGAGGUaCUGCGa----CUUUCGGuCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.