miRNA display CGI


Results 1 - 20 of 320 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14140 3' -54.5 NC_003521.1 + 101474 0.72 0.810498
Target:  5'- gCCUCguaGUGGCGCgUGAGGuGCucgagCAGCGGCg -3'
miRNA:   3'- -GGAGg--UACUGCG-ACUUU-CG-----GUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 115832 0.73 0.727995
Target:  5'- gCUCagcaGGCGCUGGcucAGGCgGGCGGCg -3'
miRNA:   3'- gGAGgua-CUGCGACU---UUCGgUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 225963 0.73 0.737594
Target:  5'- aCUCCGUcACGCUGuuGGCCAcGCGccGCa -3'
miRNA:   3'- gGAGGUAcUGCGACuuUCGGU-CGC--CG- -5'
14140 3' -54.5 NC_003521.1 + 99179 0.73 0.756519
Target:  5'- uUCUCCGgccugGGgGCUGAAGG-UGGCGGCg -3'
miRNA:   3'- -GGAGGUa----CUgCGACUUUCgGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 228291 0.73 0.765827
Target:  5'- uCCUCCAcGGCGaagugGAAAcGCCGGcCGGCc -3'
miRNA:   3'- -GGAGGUaCUGCga---CUUU-CGGUC-GCCG- -5'
14140 3' -54.5 NC_003521.1 + 75752 0.73 0.765827
Target:  5'- gCUCCuUGACGCUGuAGGgCAGaaaGGCc -3'
miRNA:   3'- gGAGGuACUGCGACuUUCgGUCg--CCG- -5'
14140 3' -54.5 NC_003521.1 + 179245 0.73 0.775023
Target:  5'- gCCUUC-UGGCGcCUGAAcucgccGGCCAGCaGCg -3'
miRNA:   3'- -GGAGGuACUGC-GACUU------UCGGUCGcCG- -5'
14140 3' -54.5 NC_003521.1 + 53178 0.72 0.784096
Target:  5'- cCCUCgccGAUGaaGAuGGCCAGCGGCg -3'
miRNA:   3'- -GGAGguaCUGCgaCUuUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 125199 0.72 0.801841
Target:  5'- aCUCCAUGGcCGCcaUGguGG-CGGCGGCa -3'
miRNA:   3'- gGAGGUACU-GCG--ACuuUCgGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 42550 0.74 0.718317
Target:  5'- uCCUCCGcGACGCccggcUGGcuGuCCGGCGGCc -3'
miRNA:   3'- -GGAGGUaCUGCG-----ACUuuC-GGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 109161 0.74 0.695804
Target:  5'- uCCUCCAgcgaGAUGUUGAAGGCCGccacgaugggucgcGUGGUg -3'
miRNA:   3'- -GGAGGUa---CUGCGACUUUCGGU--------------CGCCG- -5'
14140 3' -54.5 NC_003521.1 + 143986 0.74 0.678985
Target:  5'- gCC-CCAUGcCGCUGcaGAAGCUGGUGGUg -3'
miRNA:   3'- -GGaGGUACuGCGAC--UUUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 164683 0.82 0.324996
Target:  5'- aCC-CCGUGACGac-GAGGCCGGCGGCu -3'
miRNA:   3'- -GGaGGUACUGCgacUUUCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 103207 0.81 0.36259
Target:  5'- gCUCCAUGAC-CUGGAugaggucgccGGCCAgGCGGCg -3'
miRNA:   3'- gGAGGUACUGcGACUU----------UCGGU-CGCCG- -5'
14140 3' -54.5 NC_003521.1 + 75245 0.79 0.455316
Target:  5'- cCCUUCAUGcACGCcgagGAGGGCCGGCuGCa -3'
miRNA:   3'- -GGAGGUAC-UGCGa---CUUUCGGUCGcCG- -5'
14140 3' -54.5 NC_003521.1 + 7667 0.77 0.559407
Target:  5'- --gCCA-GACGCUG-AAGCCGGCGGg -3'
miRNA:   3'- ggaGGUaCUGCGACuUUCGGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 77225 0.77 0.559407
Target:  5'- uUCUCCAgcgUGACGCUGuAGAcGUCGGCGGg -3'
miRNA:   3'- -GGAGGU---ACUGCGAC-UUU-CGGUCGCCg -5'
14140 3' -54.5 NC_003521.1 + 224080 0.76 0.56926
Target:  5'- uCCUCCGgcgGGCGCgcgc-GCCGGCGGUc -3'
miRNA:   3'- -GGAGGUa--CUGCGacuuuCGGUCGCCG- -5'
14140 3' -54.5 NC_003521.1 + 103318 0.76 0.599049
Target:  5'- aCUCCAgcaGGCGCUGAcgcGCCAGCGccguGCg -3'
miRNA:   3'- gGAGGUa--CUGCGACUuu-CGGUCGC----CG- -5'
14140 3' -54.5 NC_003521.1 + 37442 0.75 0.659064
Target:  5'- gCCUCUgaagGUGACGCUGugGGCUcGCGcGCg -3'
miRNA:   3'- -GGAGG----UACUGCGACuuUCGGuCGC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.