miRNA display CGI


Results 21 - 40 of 252 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14147 5' -60.2 NC_003521.1 + 107337 0.72 0.436936
Target:  5'- gCAGCAgCGGCGCCAGGugauccucgaccuCGGGCGGaCAc -3'
miRNA:   3'- -GUCGUaGUCGCGGUCU-------------GUCCGCCgGU- -5'
14147 5' -60.2 NC_003521.1 + 77730 0.72 0.437799
Target:  5'- uGGCGcUGGCGCCcgaGGACGGGCcGGCCu -3'
miRNA:   3'- gUCGUaGUCGCGG---UCUGUCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 115834 0.72 0.437799
Target:  5'- uCAGCA--GGCGCuggcuCAGGCGGGCGGCgCAc -3'
miRNA:   3'- -GUCGUagUCGCG-----GUCUGUCCGCCG-GU- -5'
14147 5' -60.2 NC_003521.1 + 55018 0.72 0.437799
Target:  5'- aGGCG-CAGCGCCAG-CGucGGCGGCUc -3'
miRNA:   3'- gUCGUaGUCGCGGUCuGU--CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 138917 0.72 0.437799
Target:  5'- cCGGC-UCGGUGUCGGACcacGGCGGCUg -3'
miRNA:   3'- -GUCGuAGUCGCGGUCUGu--CCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 101500 0.72 0.446482
Target:  5'- gAGCAgCGGCgGCCAGAC--GCGGCCGa -3'
miRNA:   3'- gUCGUaGUCG-CGGUCUGucCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 45608 0.72 0.446482
Target:  5'- cCAGCAccgacaUCAGCGCCGacGCAGaCGGCCAc -3'
miRNA:   3'- -GUCGU------AGUCGCGGUc-UGUCcGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 211707 0.72 0.446482
Target:  5'- gUAGCAgcgCAGCGCgCGGAUGGuGCGGCgAa -3'
miRNA:   3'- -GUCGUa--GUCGCG-GUCUGUC-CGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 166631 0.72 0.455259
Target:  5'- aCGGCGUCGggccgcGCGCCGGGCGccgcggcgcaGCGGCCAg -3'
miRNA:   3'- -GUCGUAGU------CGCGGUCUGUc---------CGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 198211 0.72 0.455259
Target:  5'- gCGGCGaCGGCGCC--GCcGGCGGCCGu -3'
miRNA:   3'- -GUCGUaGUCGCGGucUGuCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 19665 0.72 0.467703
Target:  5'- aCGGCAggUGGCGCCAgagaccgaggaaucuGACAGGCcaGGCCGg -3'
miRNA:   3'- -GUCGUa-GUCGCGGU---------------CUGUCCG--CCGGU- -5'
14147 5' -60.2 NC_003521.1 + 200576 0.72 0.473089
Target:  5'- aAGCGUgAGCuGCCGGA--GGCGGCCc -3'
miRNA:   3'- gUCGUAgUCG-CGGUCUguCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 172076 0.72 0.476697
Target:  5'- uCAGgacCGUCAGCGgCGGcgugaugaaguccguGCGGGCGGCCGa -3'
miRNA:   3'- -GUC---GUAGUCGCgGUC---------------UGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 98477 0.72 0.482135
Target:  5'- gCGGCcgCGGCgGCCGuGGC-GGCGGCCu -3'
miRNA:   3'- -GUCGuaGUCG-CGGU-CUGuCCGCCGGu -5'
14147 5' -60.2 NC_003521.1 + 55828 0.72 0.482135
Target:  5'- cCAGUcgCAGCGC--GGCAGGCcGGCCu -3'
miRNA:   3'- -GUCGuaGUCGCGguCUGUCCG-CCGGu -5'
14147 5' -60.2 NC_003521.1 + 108028 0.72 0.482135
Target:  5'- --uCGUCGGCGUCAGGC-GGCGGCgGg -3'
miRNA:   3'- gucGUAGUCGCGGUCUGuCCGCCGgU- -5'
14147 5' -60.2 NC_003521.1 + 103869 0.71 0.490346
Target:  5'- uGGCgAUCAGCGCCgacagggGGAUGGGCuGCCGc -3'
miRNA:   3'- gUCG-UAGUCGCGG-------UCUGUCCGcCGGU- -5'
14147 5' -60.2 NC_003521.1 + 126477 0.71 0.508823
Target:  5'- cCAGCGUCaugaccgAGUGCagcacguugGGGCAGGUGGCCGa -3'
miRNA:   3'- -GUCGUAG-------UCGCGg--------UCUGUCCGCCGGU- -5'
14147 5' -60.2 NC_003521.1 + 123557 0.71 0.509754
Target:  5'- gGGCAggugCAGCGCCAGGCAGuCGuGCa- -3'
miRNA:   3'- gUCGUa---GUCGCGGUCUGUCcGC-CGgu -5'
14147 5' -60.2 NC_003521.1 + 109914 0.71 0.509754
Target:  5'- aCAGCGUCGuGUuGCCuGACGGGgGGUCGa -3'
miRNA:   3'- -GUCGUAGU-CG-CGGuCUGUCCgCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.