miRNA display CGI


Results 41 - 60 of 189 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 3' -53.8 NC_003521.1 + 1038 0.7 0.91714
Target:  5'- gCAGCCAgaUGGCCggCGUCGGGgccaccgACCUGCg -3'
miRNA:   3'- -GUUGGU--GCUGGg-GUAGCUCa------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 201266 0.7 0.91714
Target:  5'- gCAGCCAgaUGGCCggCGUCGGGgccaccgACCUGCg -3'
miRNA:   3'- -GUUGGU--GCUGGg-GUAGCUCa------UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 161878 0.7 0.922107
Target:  5'- gGAgCAUGGCCagaaagaUCggCGAGUACCUGCu -3'
miRNA:   3'- gUUgGUGCUGG-------GGuaGCUCAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 148731 0.7 0.922648
Target:  5'- aGGCCucCGugCCCAUCGugcAGUGCCUc- -3'
miRNA:   3'- gUUGGu-GCugGGGUAGC---UCAUGGAcg -5'
14148 3' -53.8 NC_003521.1 + 92727 0.7 0.922648
Target:  5'- cCAcCCGCGACCuCCGgacCGucUGCCUGCc -3'
miRNA:   3'- -GUuGGUGCUGG-GGUa--GCucAUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 107062 0.7 0.922648
Target:  5'- -cGCCGCGuCCCCGgaaUCGccggGCCUGCc -3'
miRNA:   3'- guUGGUGCuGGGGU---AGCuca-UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 112702 0.7 0.922648
Target:  5'- gGGCCGCccucgGACCCCAUgaUGcAGcGCCUGCu -3'
miRNA:   3'- gUUGGUG-----CUGGGGUA--GC-UCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 170969 0.7 0.927926
Target:  5'- -cGCgGCGGCCUCAUCGGcagcGUcaucgACCUGCc -3'
miRNA:   3'- guUGgUGCUGGGGUAGCU----CA-----UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 11834 0.69 0.932975
Target:  5'- cCAuCCACGGCUggUAUCGGG-ACCUGCg -3'
miRNA:   3'- -GUuGGUGCUGGg-GUAGCUCaUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 186710 0.69 0.932975
Target:  5'- aCGACgACGGCUCCGgucUgGAGaacgACCUGCu -3'
miRNA:   3'- -GUUGgUGCUGGGGU---AgCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 19639 0.69 0.932975
Target:  5'- -uGCCugAUGAUCuCCAUCGuGUGCCUGg -3'
miRNA:   3'- guUGG--UGCUGG-GGUAGCuCAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 118667 0.69 0.932975
Target:  5'- aCGuCCugGGCCCCAucUCGGGgcACgUGCu -3'
miRNA:   3'- -GUuGGugCUGGGGU--AGCUCa-UGgACG- -5'
14148 3' -53.8 NC_003521.1 + 208888 0.69 0.932975
Target:  5'- --uCCugGACCCCGaggagcgCGAGgucaucgcgcgcUGCCUGCc -3'
miRNA:   3'- guuGGugCUGGGGUa------GCUC------------AUGGACG- -5'
14148 3' -53.8 NC_003521.1 + 138908 0.69 0.937795
Target:  5'- -cACCACGGCCgC-UCG-GUgcGCCUGCc -3'
miRNA:   3'- guUGGUGCUGGgGuAGCuCA--UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 202583 0.69 0.937795
Target:  5'- gGGCCGCGucucGCCCCGcccgcCGAGgccgcCCUGCg -3'
miRNA:   3'- gUUGGUGC----UGGGGUa----GCUCau---GGACG- -5'
14148 3' -53.8 NC_003521.1 + 175674 0.69 0.942387
Target:  5'- --uCCACGGCCCgugCGAGguccGCUUGCg -3'
miRNA:   3'- guuGGUGCUGGGguaGCUCa---UGGACG- -5'
14148 3' -53.8 NC_003521.1 + 56283 0.69 0.942387
Target:  5'- gGACuCGCaGGCCagCAUCGAGUACUUGa -3'
miRNA:   3'- gUUG-GUG-CUGGg-GUAGCUCAUGGACg -5'
14148 3' -53.8 NC_003521.1 + 79695 0.69 0.942387
Target:  5'- --cCCGCGGCCgCGUUGAu--CCUGCa -3'
miRNA:   3'- guuGGUGCUGGgGUAGCUcauGGACG- -5'
14148 3' -53.8 NC_003521.1 + 221283 0.69 0.942387
Target:  5'- gCGGCCAaGACCCCGauccUCGGGU-CCgaggGCc -3'
miRNA:   3'- -GUUGGUgCUGGGGU----AGCUCAuGGa---CG- -5'
14148 3' -53.8 NC_003521.1 + 20509 0.69 0.942387
Target:  5'- cCGugCugGuCCCCAUCGuGUGCaUGUu -3'
miRNA:   3'- -GUugGugCuGGGGUAGCuCAUGgACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.