Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 109531 | 0.67 | 0.840473 |
Target: 5'- -aGCAGGGCgUGUACa-GGUCGCUCa -3' miRNA: 3'- gaCGUCUUGgACGUGgcCCAGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 140701 | 0.67 | 0.840473 |
Target: 5'- -cGCAGGACCgccaGC-CgCGGGUCGCauCCUg -3' miRNA: 3'- gaCGUCUUGGa---CGuG-GCCCAGUG--GGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 172754 | 0.67 | 0.840473 |
Target: 5'- uUGCGGGGCCcggcauucuggcUGcCACCGGGggCGCCg- -3' miRNA: 3'- gACGUCUUGG------------AC-GUGGCCCa-GUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 44160 | 0.67 | 0.850496 |
Target: 5'- cCUGguGGACCUGCgcacccaGCuggacgugcucuacuCGGG-CACCCUg -3' miRNA: 3'- -GACguCUUGGACG-------UG---------------GCCCaGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 129914 | 0.67 | 0.853518 |
Target: 5'- gUGCGGAACa-GCACCGuGGUCAaagagaacgccaucUCCUu -3' miRNA: 3'- gACGUCUUGgaCGUGGC-CCAGU--------------GGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 184626 | 0.67 | 0.855765 |
Target: 5'- gUGCGGuacaGACCUGCGCCG--UCACCg- -3' miRNA: 3'- gACGUC----UUGGACGUGGCccAGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 34606 | 0.67 | 0.863135 |
Target: 5'- -cGCAGAuggACUcgUGCACgGGGUCgcagcggaucauGCCCUu -3' miRNA: 3'- gaCGUCU---UGG--ACGUGgCCCAG------------UGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 77599 | 0.66 | 0.870312 |
Target: 5'- -gGCcGAACCcacGuCACCGGGcgCGCCCg -3' miRNA: 3'- gaCGuCUUGGa--C-GUGGCCCa-GUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 48993 | 0.66 | 0.870312 |
Target: 5'- gCUGaGGAACgUGCugCGGGaCGCCg- -3' miRNA: 3'- -GACgUCUUGgACGugGCCCaGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 221344 | 0.66 | 0.870312 |
Target: 5'- -aGCGGGccACCUGCACCuGGcCGCgCa -3' miRNA: 3'- gaCGUCU--UGGACGUGGcCCaGUGgGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 177545 | 0.66 | 0.877291 |
Target: 5'- -aGCAGcugCUGCACCcGGUCGCCg- -3' miRNA: 3'- gaCGUCuugGACGUGGcCCAGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 54001 | 0.66 | 0.877291 |
Target: 5'- -cGCAGGACC-GUcagAUCuGGUCGCCCa -3' miRNA: 3'- gaCGUCUUGGaCG---UGGcCCAGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 105397 | 0.66 | 0.877291 |
Target: 5'- -cGCGGGcGCCaaaucGCGCCGGGUgauugguuccCGCCCg -3' miRNA: 3'- gaCGUCU-UGGa----CGUGGCCCA----------GUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 114674 | 0.66 | 0.88407 |
Target: 5'- gUGCAGGACCUGUucGCCGucUUcCCCa -3' miRNA: 3'- gACGUCUUGGACG--UGGCccAGuGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 120963 | 0.66 | 0.88407 |
Target: 5'- aCUGCGG-ACCgagGC-CCGGGUggaUAUCCg -3' miRNA: 3'- -GACGUCuUGGa--CGuGGCCCA---GUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 102835 | 0.66 | 0.88407 |
Target: 5'- gCUGCgAGAAgC-GCGCCaGGG-CGCCCg -3' miRNA: 3'- -GACG-UCUUgGaCGUGG-CCCaGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 178794 | 0.66 | 0.88407 |
Target: 5'- uUGCAGGACggGCccCCGGG-CACCUc -3' miRNA: 3'- gACGUCUUGgaCGu-GGCCCaGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 166623 | 0.66 | 0.88407 |
Target: 5'- -gGCAGAagacggcgucggGCCgcGCGCCGGG-CGCCg- -3' miRNA: 3'- gaCGUCU------------UGGa-CGUGGCCCaGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 141124 | 0.66 | 0.888038 |
Target: 5'- cCUGCAGAagcggccgcccgagACCuucggcaaccccgUGCACCGGGcCAUggCCUa -3' miRNA: 3'- -GACGUCU--------------UGG-------------ACGUGGCCCaGUG--GGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 204127 | 0.66 | 0.890641 |
Target: 5'- cCUGCucGGGCCagGCGCCGGa--GCCCg -3' miRNA: 3'- -GACGu-CUUGGa-CGUGGCCcagUGGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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