Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 229644 | 0.69 | 0.754654 |
Target: 5'- -aGaCAGGugCUGCcucACCGGGaUCAUCCUc -3' miRNA: 3'- gaC-GUCUugGACG---UGGCCC-AGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 31039 | 0.69 | 0.754654 |
Target: 5'- cCUGCAGcACCUGUaACCGGaGcUCGCuCCa -3' miRNA: 3'- -GACGUCuUGGACG-UGGCC-C-AGUG-GGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 65352 | 0.69 | 0.763816 |
Target: 5'- aUGCAGGACgUGCuguCCGGGgagacggCGCgCCg -3' miRNA: 3'- gACGUCUUGgACGu--GGCCCa------GUG-GGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 187183 | 0.69 | 0.763816 |
Target: 5'- gUGCGGAgacggcccGCCUGCAUCGGGgaCAUUCg -3' miRNA: 3'- gACGUCU--------UGGACGUGGCCCa-GUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 123199 | 0.68 | 0.772869 |
Target: 5'- -gGCGGAACga-CACCGGGUCGCUg- -3' miRNA: 3'- gaCGUCUUGgacGUGGCCCAGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 138035 | 0.68 | 0.781807 |
Target: 5'- gCUGcCGGcGCaCgggGCugUGGGUCGCCCg -3' miRNA: 3'- -GAC-GUCuUG-Ga--CGugGCCCAGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 137316 | 0.68 | 0.781807 |
Target: 5'- -cGCGc-GCCUGCuGCUGGGcUCGCCCUu -3' miRNA: 3'- gaCGUcuUGGACG-UGGCCC-AGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 212510 | 0.68 | 0.781807 |
Target: 5'- -cGCAG-GCC-GCGCCGGGgucgCugCCg -3' miRNA: 3'- gaCGUCuUGGaCGUGGCCCa---GugGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 191704 | 0.68 | 0.781807 |
Target: 5'- -cGCAGcAGCg-GCGCCGcGGUCACCa- -3' miRNA: 3'- gaCGUC-UUGgaCGUGGC-CCAGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 113214 | 0.68 | 0.807845 |
Target: 5'- -aGCAGuACCUGCGCuCGGGccUCACgUg -3' miRNA: 3'- gaCGUCuUGGACGUG-GCCC--AGUGgGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 22604 | 0.68 | 0.807845 |
Target: 5'- cCUGCGGucGCCugaccuccguUGC-CCGGGaCACCCa -3' miRNA: 3'- -GACGUCu-UGG----------ACGuGGCCCaGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 112680 | 0.68 | 0.807845 |
Target: 5'- cCUGCAGGccuucGCCgaGCG-CGGGcCGCCCUc -3' miRNA: 3'- -GACGUCU-----UGGa-CGUgGCCCaGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 156380 | 0.68 | 0.81624 |
Target: 5'- cCUGCAGcGCCUG-ACCGaGGgccgcuucgcCACCCUg -3' miRNA: 3'- -GACGUCuUGGACgUGGC-CCa---------GUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 92098 | 0.67 | 0.824481 |
Target: 5'- -cGCAGGGCggUGCcCCGGGUCggaACCCc -3' miRNA: 3'- gaCGUCUUGg-ACGuGGCCCAG---UGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 24978 | 0.67 | 0.824481 |
Target: 5'- -gGuCAGAACCUGUACCGaucUCAUCCa -3' miRNA: 3'- gaC-GUCUUGGACGUGGCcc-AGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 110545 | 0.67 | 0.83176 |
Target: 5'- -gGCGGGccgaugcACCUGUuCCGGGUgAUCCa -3' miRNA: 3'- gaCGUCU-------UGGACGuGGCCCAgUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 221899 | 0.67 | 0.832561 |
Target: 5'- -gGCGGAuuGCCgGCGCgCGGcGcCACCCUu -3' miRNA: 3'- gaCGUCU--UGGaCGUG-GCC-CaGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 183547 | 0.67 | 0.832561 |
Target: 5'- -cGCAccGACCUGCuGCUGGGUCGCUUc -3' miRNA: 3'- gaCGUc-UUGGACG-UGGCCCAGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 226807 | 0.67 | 0.832561 |
Target: 5'- -cGUAGGACCUgacgguacaGCGCCaugGGGUCcucGCCCg -3' miRNA: 3'- gaCGUCUUGGA---------CGUGG---CCCAG---UGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 111746 | 0.67 | 0.840473 |
Target: 5'- cCUGCaguacgccgAGggUCUGCGCCagcucaGGG-CGCCCUc -3' miRNA: 3'- -GACG---------UCuuGGACGUGG------CCCaGUGGGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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