miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 5' -58.5 NC_003521.1 + 106562 1.08 0.003168
Target:  5'- gCUGCAGAACCUGCACCGGGUCACCCUg -3'
miRNA:   3'- -GACGUCUUGGACGUGGCCCAGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 59692 0.8 0.209016
Target:  5'- cCUGgAGAACCUGgACuCGGGUCGCCUg -3'
miRNA:   3'- -GACgUCUUGGACgUG-GCCCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 161192 0.78 0.282425
Target:  5'- -aGCAGAcgacGCCgagGCGCCGcGGUCGCCCc -3'
miRNA:   3'- gaCGUCU----UGGa--CGUGGC-CCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 6686 0.77 0.321965
Target:  5'- gCUGCAGGGCCUGCGCCcgcgagcgcugcuGGGUCucGCCg- -3'
miRNA:   3'- -GACGUCUUGGACGUGG-------------CCCAG--UGGga -5'
14148 5' -58.5 NC_003521.1 + 140627 0.76 0.38593
Target:  5'- cCUGCagcgguacacggccgAGAGCCUGCGCCuGG-CGCCCUa -3'
miRNA:   3'- -GACG---------------UCUUGGACGUGGcCCaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 17640 0.73 0.494837
Target:  5'- gCUGCGGAgcuacguacGCCaGCACCGGGgCACCa- -3'
miRNA:   3'- -GACGUCU---------UGGaCGUGGCCCaGUGGga -5'
14148 5' -58.5 NC_003521.1 + 120606 0.73 0.513426
Target:  5'- aCUGcCAGGugUUGCGCCuGGUCACCa- -3'
miRNA:   3'- -GAC-GUCUugGACGUGGcCCAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 65426 0.72 0.541822
Target:  5'- cCUGacccACCUGCGCCGGGUCAugggucCCCg -3'
miRNA:   3'- -GACgucuUGGACGUGGCCCAGU------GGGa -5'
14148 5' -58.5 NC_003521.1 + 126963 0.71 0.639262
Target:  5'- -cGCGGAACCcGCGCCGucGUCGCCg- -3'
miRNA:   3'- gaCGUCUUGGaCGUGGCc-CAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 219234 0.71 0.639262
Target:  5'- uUGCAGGACCcaggucagcaGCGCCGGGUagagcaggGCCCg -3'
miRNA:   3'- gACGUCUUGGa---------CGUGGCCCAg-------UGGGa -5'
14148 5' -58.5 NC_003521.1 + 205138 0.71 0.649087
Target:  5'- aUGguGAACCaGgGCCGGGUgGCCg- -3'
miRNA:   3'- gACguCUUGGaCgUGGCCCAgUGGga -5'
14148 5' -58.5 NC_003521.1 + 116024 0.7 0.668694
Target:  5'- -aGCuGGugCUGCcCUGGGUCAUCCc -3'
miRNA:   3'- gaCGuCUugGACGuGGCCCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 206237 0.7 0.67846
Target:  5'- uCUGCGcGcGCCUGCAgcCCGGcGUCAgCCUg -3'
miRNA:   3'- -GACGU-CuUGGACGU--GGCC-CAGUgGGA- -5'
14148 5' -58.5 NC_003521.1 + 72030 0.7 0.697879
Target:  5'- -cGCGuGGCCUGCACCaGGUCcuggugcagACCCUu -3'
miRNA:   3'- gaCGUcUUGGACGUGGcCCAG---------UGGGA- -5'
14148 5' -58.5 NC_003521.1 + 176446 0.7 0.706554
Target:  5'- uCUGCAGAcgcGCCcGCACCucgggcauguccaGGG-CGCCCa -3'
miRNA:   3'- -GACGUCU---UGGaCGUGG-------------CCCaGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 186317 0.7 0.707516
Target:  5'- gUGCAGAuCCUGguccaCGCCGGGcCGCCg- -3'
miRNA:   3'- gACGUCUuGGAC-----GUGGCCCaGUGGga -5'
14148 5' -58.5 NC_003521.1 + 22295 0.69 0.717094
Target:  5'- -gGCAGcucuCCUGCACCuucacGGUCugCCUg -3'
miRNA:   3'- gaCGUCuu--GGACGUGGc----CCAGugGGA- -5'
14148 5' -58.5 NC_003521.1 + 66087 0.69 0.736041
Target:  5'- -aGC-GAGcCCUGCGuuGGGcCGCCCUc -3'
miRNA:   3'- gaCGuCUU-GGACGUggCCCaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 186747 0.69 0.736041
Target:  5'- aUGUAGAACCgguUGCGCCGGa--ACCCc -3'
miRNA:   3'- gACGUCUUGG---ACGUGGCCcagUGGGa -5'
14148 5' -58.5 NC_003521.1 + 109735 0.69 0.745394
Target:  5'- -gGUGGGACUUGUGCaGGGUCACCg- -3'
miRNA:   3'- gaCGUCUUGGACGUGgCCCAGUGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.