miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 5' -58.5 NC_003521.1 + 111746 0.67 0.840473
Target:  5'- cCUGCaguacgccgAGggUCUGCGCCagcucaGGG-CGCCCUc -3'
miRNA:   3'- -GACG---------UCuuGGACGUGG------CCCaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 22604 0.68 0.807845
Target:  5'- cCUGCGGucGCCugaccuccguUGC-CCGGGaCACCCa -3'
miRNA:   3'- -GACGUCu-UGG----------ACGuGGCCCaGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 156380 0.68 0.81624
Target:  5'- cCUGCAGcGCCUG-ACCGaGGgccgcuucgcCACCCUg -3'
miRNA:   3'- -GACGUCuUGGACgUGGC-CCa---------GUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 92098 0.67 0.824481
Target:  5'- -cGCAGGGCggUGCcCCGGGUCggaACCCc -3'
miRNA:   3'- gaCGUCUUGg-ACGuGGCCCAG---UGGGa -5'
14148 5' -58.5 NC_003521.1 + 110545 0.67 0.83176
Target:  5'- -gGCGGGccgaugcACCUGUuCCGGGUgAUCCa -3'
miRNA:   3'- gaCGUCU-------UGGACGuGGCCCAgUGGGa -5'
14148 5' -58.5 NC_003521.1 + 226807 0.67 0.832561
Target:  5'- -cGUAGGACCUgacgguacaGCGCCaugGGGUCcucGCCCg -3'
miRNA:   3'- gaCGUCUUGGA---------CGUGG---CCCAG---UGGGa -5'
14148 5' -58.5 NC_003521.1 + 221899 0.67 0.832561
Target:  5'- -gGCGGAuuGCCgGCGCgCGGcGcCACCCUu -3'
miRNA:   3'- gaCGUCU--UGGaCGUG-GCC-CaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 109531 0.67 0.840473
Target:  5'- -aGCAGGGCgUGUACa-GGUCGCUCa -3'
miRNA:   3'- gaCGUCUUGgACGUGgcCCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 172754 0.67 0.840473
Target:  5'- uUGCGGGGCCcggcauucuggcUGcCACCGGGggCGCCg- -3'
miRNA:   3'- gACGUCUUGG------------AC-GUGGCCCa-GUGGga -5'
14148 5' -58.5 NC_003521.1 + 113214 0.68 0.807845
Target:  5'- -aGCAGuACCUGCGCuCGGGccUCACgUg -3'
miRNA:   3'- gaCGUCuUGGACGUG-GCCC--AGUGgGa -5'
14148 5' -58.5 NC_003521.1 + 138035 0.68 0.781807
Target:  5'- gCUGcCGGcGCaCgggGCugUGGGUCGCCCg -3'
miRNA:   3'- -GAC-GUCuUG-Ga--CGugGCCCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 123199 0.68 0.772869
Target:  5'- -gGCGGAACga-CACCGGGUCGCUg- -3'
miRNA:   3'- gaCGUCUUGgacGUGGCCCAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 126963 0.71 0.639262
Target:  5'- -cGCGGAACCcGCGCCGucGUCGCCg- -3'
miRNA:   3'- gaCGUCUUGGaCGUGGCc-CAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 219234 0.71 0.639262
Target:  5'- uUGCAGGACCcaggucagcaGCGCCGGGUagagcaggGCCCg -3'
miRNA:   3'- gACGUCUUGGa---------CGUGGCCCAg-------UGGGa -5'
14148 5' -58.5 NC_003521.1 + 205138 0.71 0.649087
Target:  5'- aUGguGAACCaGgGCCGGGUgGCCg- -3'
miRNA:   3'- gACguCUUGGaCgUGGCCCAgUGGga -5'
14148 5' -58.5 NC_003521.1 + 72030 0.7 0.697879
Target:  5'- -cGCGuGGCCUGCACCaGGUCcuggugcagACCCUu -3'
miRNA:   3'- gaCGUcUUGGACGUGGcCCAG---------UGGGA- -5'
14148 5' -58.5 NC_003521.1 + 66087 0.69 0.736041
Target:  5'- -aGC-GAGcCCUGCGuuGGGcCGCCCUc -3'
miRNA:   3'- gaCGuCUU-GGACGUggCCCaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 186747 0.69 0.736041
Target:  5'- aUGUAGAACCgguUGCGCCGGa--ACCCc -3'
miRNA:   3'- gACGUCUUGG---ACGUGGCCcagUGGGa -5'
14148 5' -58.5 NC_003521.1 + 109735 0.69 0.745394
Target:  5'- -gGUGGGACUUGUGCaGGGUCACCg- -3'
miRNA:   3'- gaCGUCUUGGACGUGgCCCAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 65352 0.69 0.763816
Target:  5'- aUGCAGGACgUGCuguCCGGGgagacggCGCgCCg -3'
miRNA:   3'- gACGUCUUGgACGu--GGCCCa------GUG-GGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.