Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 106562 | 1.08 | 0.003168 |
Target: 5'- gCUGCAGAACCUGCACCGGGUCACCCUg -3' miRNA: 3'- -GACGUCUUGGACGUGGCCCAGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 212510 | 0.68 | 0.781807 |
Target: 5'- -cGCAG-GCC-GCGCCGGGgucgCugCCg -3' miRNA: 3'- gaCGUCuUGGaCGUGGCCCa---GugGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 24978 | 0.67 | 0.824481 |
Target: 5'- -gGuCAGAACCUGUACCGaucUCAUCCa -3' miRNA: 3'- gaC-GUCUUGGACGUGGCcc-AGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 34246 | 0.66 | 0.897004 |
Target: 5'- -aGcCGGGGCCUGUcguGCCccGUCGCCCUa -3' miRNA: 3'- gaC-GUCUUGGACG---UGGccCAGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 140627 | 0.76 | 0.38593 |
Target: 5'- cCUGCagcgguacacggccgAGAGCCUGCGCCuGG-CGCCCUa -3' miRNA: 3'- -GACG---------------UCUUGGACGUGGcCCaGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 17640 | 0.73 | 0.494837 |
Target: 5'- gCUGCGGAgcuacguacGCCaGCACCGGGgCACCa- -3' miRNA: 3'- -GACGUCU---------UGGaCGUGGCCCaGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 116024 | 0.7 | 0.668694 |
Target: 5'- -aGCuGGugCUGCcCUGGGUCAUCCc -3' miRNA: 3'- gaCGuCUugGACGuGGCCCAGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 206237 | 0.7 | 0.67846 |
Target: 5'- uCUGCGcGcGCCUGCAgcCCGGcGUCAgCCUg -3' miRNA: 3'- -GACGU-CuUGGACGU--GGCC-CAGUgGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 22295 | 0.69 | 0.717094 |
Target: 5'- -gGCAGcucuCCUGCACCuucacGGUCugCCUg -3' miRNA: 3'- gaCGUCuu--GGACGUGGc----CCAGugGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 191704 | 0.68 | 0.781807 |
Target: 5'- -cGCAGcAGCg-GCGCCGcGGUCACCa- -3' miRNA: 3'- gaCGUC-UUGgaCGUGGC-CCAGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 31039 | 0.69 | 0.754654 |
Target: 5'- cCUGCAGcACCUGUaACCGGaGcUCGCuCCa -3' miRNA: 3'- -GACGUCuUGGACG-UGGCC-C-AGUG-GGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 186317 | 0.7 | 0.707516 |
Target: 5'- gUGCAGAuCCUGguccaCGCCGGGcCGCCg- -3' miRNA: 3'- gACGUCUuGGAC-----GUGGCCCaGUGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 59692 | 0.8 | 0.209016 |
Target: 5'- cCUGgAGAACCUGgACuCGGGUCGCCUg -3' miRNA: 3'- -GACgUCUUGGACgUG-GCCCAGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 187183 | 0.69 | 0.763816 |
Target: 5'- gUGCGGAgacggcccGCCUGCAUCGGGgaCAUUCg -3' miRNA: 3'- gACGUCU--------UGGACGUGGCCCa-GUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 161192 | 0.78 | 0.282425 |
Target: 5'- -aGCAGAcgacGCCgagGCGCCGcGGUCGCCCc -3' miRNA: 3'- gaCGUCU----UGGa--CGUGGC-CCAGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 176446 | 0.7 | 0.706554 |
Target: 5'- uCUGCAGAcgcGCCcGCACCucgggcauguccaGGG-CGCCCa -3' miRNA: 3'- -GACGUCU---UGGaCGUGG-------------CCCaGUGGGa -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 137316 | 0.68 | 0.781807 |
Target: 5'- -cGCGc-GCCUGCuGCUGGGcUCGCCCUu -3' miRNA: 3'- gaCGUcuUGGACG-UGGCCC-AGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 112680 | 0.68 | 0.807845 |
Target: 5'- cCUGCAGGccuucGCCgaGCG-CGGGcCGCCCUc -3' miRNA: 3'- -GACGUCU-----UGGa-CGUgGCCCaGUGGGA- -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 6686 | 0.77 | 0.321965 |
Target: 5'- gCUGCAGGGCCUGCGCCcgcgagcgcugcuGGGUCucGCCg- -3' miRNA: 3'- -GACGUCUUGGACGUGG-------------CCCAG--UGGga -5' |
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14148 | 5' | -58.5 | NC_003521.1 | + | 120606 | 0.73 | 0.513426 |
Target: 5'- aCUGcCAGGugUUGCGCCuGGUCACCa- -3' miRNA: 3'- -GAC-GUCUugGACGUGGcCCAGUGGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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