miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 5' -58.5 NC_003521.1 + 1483 0.66 0.890641
Target:  5'- gCUGCAGAcGCCcggacgacUGCGCCaacccuGGGUgAUCCUg -3'
miRNA:   3'- -GACGUCU-UGG--------ACGUGG------CCCAgUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 6686 0.77 0.321965
Target:  5'- gCUGCAGGGCCUGCGCCcgcgagcgcugcuGGGUCucGCCg- -3'
miRNA:   3'- -GACGUCUUGGACGUGG-------------CCCAG--UGGga -5'
14148 5' -58.5 NC_003521.1 + 17640 0.73 0.494837
Target:  5'- gCUGCGGAgcuacguacGCCaGCACCGGGgCACCa- -3'
miRNA:   3'- -GACGUCU---------UGGaCGUGGCCCaGUGGga -5'
14148 5' -58.5 NC_003521.1 + 22295 0.69 0.717094
Target:  5'- -gGCAGcucuCCUGCACCuucacGGUCugCCUg -3'
miRNA:   3'- gaCGUCuu--GGACGUGGc----CCAGugGGA- -5'
14148 5' -58.5 NC_003521.1 + 22604 0.68 0.807845
Target:  5'- cCUGCGGucGCCugaccuccguUGC-CCGGGaCACCCa -3'
miRNA:   3'- -GACGUCu-UGG----------ACGuGGCCCaGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 24978 0.67 0.824481
Target:  5'- -gGuCAGAACCUGUACCGaucUCAUCCa -3'
miRNA:   3'- gaC-GUCUUGGACGUGGCcc-AGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 31039 0.69 0.754654
Target:  5'- cCUGCAGcACCUGUaACCGGaGcUCGCuCCa -3'
miRNA:   3'- -GACGUCuUGGACG-UGGCC-C-AGUG-GGa -5'
14148 5' -58.5 NC_003521.1 + 34246 0.66 0.897004
Target:  5'- -aGcCGGGGCCUGUcguGCCccGUCGCCCUa -3'
miRNA:   3'- gaC-GUCUUGGACG---UGGccCAGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 34606 0.67 0.863135
Target:  5'- -cGCAGAuggACUcgUGCACgGGGUCgcagcggaucauGCCCUu -3'
miRNA:   3'- gaCGUCU---UGG--ACGUGgCCCAG------------UGGGA- -5'
14148 5' -58.5 NC_003521.1 + 44160 0.67 0.850496
Target:  5'- cCUGguGGACCUGCgcacccaGCuggacgugcucuacuCGGG-CACCCUg -3'
miRNA:   3'- -GACguCUUGGACG-------UG---------------GCCCaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 48993 0.66 0.870312
Target:  5'- gCUGaGGAACgUGCugCGGGaCGCCg- -3'
miRNA:   3'- -GACgUCUUGgACGugGCCCaGUGGga -5'
14148 5' -58.5 NC_003521.1 + 54001 0.66 0.877291
Target:  5'- -cGCAGGACC-GUcagAUCuGGUCGCCCa -3'
miRNA:   3'- gaCGUCUUGGaCG---UGGcCCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 59692 0.8 0.209016
Target:  5'- cCUGgAGAACCUGgACuCGGGUCGCCUg -3'
miRNA:   3'- -GACgUCUUGGACgUG-GCCCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 65352 0.69 0.763816
Target:  5'- aUGCAGGACgUGCuguCCGGGgagacggCGCgCCg -3'
miRNA:   3'- gACGUCUUGgACGu--GGCCCa------GUG-GGa -5'
14148 5' -58.5 NC_003521.1 + 65426 0.72 0.541822
Target:  5'- cCUGacccACCUGCGCCGGGUCAugggucCCCg -3'
miRNA:   3'- -GACgucuUGGACGUGGCCCAGU------GGGa -5'
14148 5' -58.5 NC_003521.1 + 66087 0.69 0.736041
Target:  5'- -aGC-GAGcCCUGCGuuGGGcCGCCCUc -3'
miRNA:   3'- gaCGuCUU-GGACGUggCCCaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 72030 0.7 0.697879
Target:  5'- -cGCGuGGCCUGCACCaGGUCcuggugcagACCCUu -3'
miRNA:   3'- gaCGUcUUGGACGUGGcCCAG---------UGGGA- -5'
14148 5' -58.5 NC_003521.1 + 76531 0.66 0.890641
Target:  5'- --cCAGGGCCUGCGCCGuca-GCCCg -3'
miRNA:   3'- gacGUCUUGGACGUGGCccagUGGGa -5'
14148 5' -58.5 NC_003521.1 + 77599 0.66 0.870312
Target:  5'- -gGCcGAACCcacGuCACCGGGcgCGCCCg -3'
miRNA:   3'- gaCGuCUUGGa--C-GUGGCCCa-GUGGGa -5'
14148 5' -58.5 NC_003521.1 + 92098 0.67 0.824481
Target:  5'- -cGCAGGGCggUGCcCCGGGUCggaACCCc -3'
miRNA:   3'- gaCGUCUUGg-ACGuGGCCCAG---UGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.