miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 5' -58.5 NC_003521.1 + 234350 0.66 0.897004
Target:  5'- gCUGCcGGACCUGCcucCCGugccGUCAUCCg -3'
miRNA:   3'- -GACGuCUUGGACGu--GGCc---CAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 229644 0.69 0.754654
Target:  5'- -aGaCAGGugCUGCcucACCGGGaUCAUCCUc -3'
miRNA:   3'- gaC-GUCUugGACG---UGGCCC-AGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 226807 0.67 0.832561
Target:  5'- -cGUAGGACCUgacgguacaGCGCCaugGGGUCcucGCCCg -3'
miRNA:   3'- gaCGUCUUGGA---------CGUGG---CCCAG---UGGGa -5'
14148 5' -58.5 NC_003521.1 + 221899 0.67 0.832561
Target:  5'- -gGCGGAuuGCCgGCGCgCGGcGcCACCCUu -3'
miRNA:   3'- gaCGUCU--UGGaCGUG-GCC-CaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 221344 0.66 0.870312
Target:  5'- -aGCGGGccACCUGCACCuGGcCGCgCa -3'
miRNA:   3'- gaCGUCU--UGGACGUGGcCCaGUGgGa -5'
14148 5' -58.5 NC_003521.1 + 219234 0.71 0.639262
Target:  5'- uUGCAGGACCcaggucagcaGCGCCGGGUagagcaggGCCCg -3'
miRNA:   3'- gACGUCUUGGa---------CGUGGCCCAg-------UGGGa -5'
14148 5' -58.5 NC_003521.1 + 212510 0.68 0.781807
Target:  5'- -cGCAG-GCC-GCGCCGGGgucgCugCCg -3'
miRNA:   3'- gaCGUCuUGGaCGUGGCCCa---GugGGa -5'
14148 5' -58.5 NC_003521.1 + 206237 0.7 0.67846
Target:  5'- uCUGCGcGcGCCUGCAgcCCGGcGUCAgCCUg -3'
miRNA:   3'- -GACGU-CuUGGACGU--GGCC-CAGUgGGA- -5'
14148 5' -58.5 NC_003521.1 + 205138 0.71 0.649087
Target:  5'- aUGguGAACCaGgGCCGGGUgGCCg- -3'
miRNA:   3'- gACguCUUGGaCgUGGCCCAgUGGga -5'
14148 5' -58.5 NC_003521.1 + 204127 0.66 0.890641
Target:  5'- cCUGCucGGGCCagGCGCCGGa--GCCCg -3'
miRNA:   3'- -GACGu-CUUGGa-CGUGGCCcagUGGGa -5'
14148 5' -58.5 NC_003521.1 + 201710 0.66 0.890641
Target:  5'- gCUGCAGAcGCCcggacgacUGCGCCaacccuGGGUgAUCCUg -3'
miRNA:   3'- -GACGUCU-UGG--------ACGUGG------CCCAgUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 191704 0.68 0.781807
Target:  5'- -cGCAGcAGCg-GCGCCGcGGUCACCa- -3'
miRNA:   3'- gaCGUC-UUGgaCGUGGC-CCAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 187183 0.69 0.763816
Target:  5'- gUGCGGAgacggcccGCCUGCAUCGGGgaCAUUCg -3'
miRNA:   3'- gACGUCU--------UGGACGUGGCCCa-GUGGGa -5'
14148 5' -58.5 NC_003521.1 + 186747 0.69 0.736041
Target:  5'- aUGUAGAACCgguUGCGCCGGa--ACCCc -3'
miRNA:   3'- gACGUCUUGG---ACGUGGCCcagUGGGa -5'
14148 5' -58.5 NC_003521.1 + 186317 0.7 0.707516
Target:  5'- gUGCAGAuCCUGguccaCGCCGGGcCGCCg- -3'
miRNA:   3'- gACGUCUuGGAC-----GUGGCCCaGUGGga -5'
14148 5' -58.5 NC_003521.1 + 184626 0.67 0.855765
Target:  5'- gUGCGGuacaGACCUGCGCCG--UCACCg- -3'
miRNA:   3'- gACGUC----UUGGACGUGGCccAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 183547 0.67 0.832561
Target:  5'- -cGCAccGACCUGCuGCUGGGUCGCUUc -3'
miRNA:   3'- gaCGUc-UUGGACG-UGGCCCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 178794 0.66 0.88407
Target:  5'- uUGCAGGACggGCccCCGGG-CACCUc -3'
miRNA:   3'- gACGUCUUGgaCGu-GGCCCaGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 177545 0.66 0.877291
Target:  5'- -aGCAGcugCUGCACCcGGUCGCCg- -3'
miRNA:   3'- gaCGUCuugGACGUGGcCCAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 176446 0.7 0.706554
Target:  5'- uCUGCAGAcgcGCCcGCACCucgggcauguccaGGG-CGCCCa -3'
miRNA:   3'- -GACGUCU---UGGaCGUGG-------------CCCaGUGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.