miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14148 5' -58.5 NC_003521.1 + 102835 0.66 0.88407
Target:  5'- gCUGCgAGAAgC-GCGCCaGGG-CGCCCg -3'
miRNA:   3'- -GACG-UCUUgGaCGUGG-CCCaGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 105397 0.66 0.877291
Target:  5'- -cGCGGGcGCCaaaucGCGCCGGGUgauugguuccCGCCCg -3'
miRNA:   3'- gaCGUCU-UGGa----CGUGGCCCA----------GUGGGa -5'
14148 5' -58.5 NC_003521.1 + 106562 1.08 0.003168
Target:  5'- gCUGCAGAACCUGCACCGGGUCACCCUg -3'
miRNA:   3'- -GACGUCUUGGACGUGGCCCAGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 109531 0.67 0.840473
Target:  5'- -aGCAGGGCgUGUACa-GGUCGCUCa -3'
miRNA:   3'- gaCGUCUUGgACGUGgcCCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 109735 0.69 0.745394
Target:  5'- -gGUGGGACUUGUGCaGGGUCACCg- -3'
miRNA:   3'- gaCGUCUUGGACGUGgCCCAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 110545 0.67 0.83176
Target:  5'- -gGCGGGccgaugcACCUGUuCCGGGUgAUCCa -3'
miRNA:   3'- gaCGUCU-------UGGACGuGGCCCAgUGGGa -5'
14148 5' -58.5 NC_003521.1 + 111746 0.67 0.840473
Target:  5'- cCUGCaguacgccgAGggUCUGCGCCagcucaGGG-CGCCCUc -3'
miRNA:   3'- -GACG---------UCuuGGACGUGG------CCCaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 112680 0.68 0.807845
Target:  5'- cCUGCAGGccuucGCCgaGCG-CGGGcCGCCCUc -3'
miRNA:   3'- -GACGUCU-----UGGa-CGUgGCCCaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 113214 0.68 0.807845
Target:  5'- -aGCAGuACCUGCGCuCGGGccUCACgUg -3'
miRNA:   3'- gaCGUCuUGGACGUG-GCCC--AGUGgGa -5'
14148 5' -58.5 NC_003521.1 + 114674 0.66 0.88407
Target:  5'- gUGCAGGACCUGUucGCCGucUUcCCCa -3'
miRNA:   3'- gACGUCUUGGACG--UGGCccAGuGGGa -5'
14148 5' -58.5 NC_003521.1 + 116024 0.7 0.668694
Target:  5'- -aGCuGGugCUGCcCUGGGUCAUCCc -3'
miRNA:   3'- gaCGuCUugGACGuGGCCCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 120606 0.73 0.513426
Target:  5'- aCUGcCAGGugUUGCGCCuGGUCACCa- -3'
miRNA:   3'- -GAC-GUCUugGACGUGGcCCAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 120963 0.66 0.88407
Target:  5'- aCUGCGG-ACCgagGC-CCGGGUggaUAUCCg -3'
miRNA:   3'- -GACGUCuUGGa--CGuGGCCCA---GUGGGa -5'
14148 5' -58.5 NC_003521.1 + 123199 0.68 0.772869
Target:  5'- -gGCGGAACga-CACCGGGUCGCUg- -3'
miRNA:   3'- gaCGUCUUGgacGUGGCCCAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 126963 0.71 0.639262
Target:  5'- -cGCGGAACCcGCGCCGucGUCGCCg- -3'
miRNA:   3'- gaCGUCUUGGaCGUGGCc-CAGUGGga -5'
14148 5' -58.5 NC_003521.1 + 129914 0.67 0.853518
Target:  5'- gUGCGGAACa-GCACCGuGGUCAaagagaacgccaucUCCUu -3'
miRNA:   3'- gACGUCUUGgaCGUGGC-CCAGU--------------GGGA- -5'
14148 5' -58.5 NC_003521.1 + 137316 0.68 0.781807
Target:  5'- -cGCGc-GCCUGCuGCUGGGcUCGCCCUu -3'
miRNA:   3'- gaCGUcuUGGACG-UGGCCC-AGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 138035 0.68 0.781807
Target:  5'- gCUGcCGGcGCaCgggGCugUGGGUCGCCCg -3'
miRNA:   3'- -GAC-GUCuUG-Ga--CGugGCCCAGUGGGa -5'
14148 5' -58.5 NC_003521.1 + 140627 0.76 0.38593
Target:  5'- cCUGCagcgguacacggccgAGAGCCUGCGCCuGG-CGCCCUa -3'
miRNA:   3'- -GACG---------------UCUUGGACGUGGcCCaGUGGGA- -5'
14148 5' -58.5 NC_003521.1 + 140701 0.67 0.840473
Target:  5'- -cGCAGGACCgccaGC-CgCGGGUCGCauCCUg -3'
miRNA:   3'- gaCGUCUUGGa---CGuG-GCCCAGUG--GGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.