Results 21 - 40 of 67 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 205138 | 0.71 | 0.649087 |
Target: 5'- aUGguGAACCaGgGCCGGGUgGCCg- -3' miRNA: 3'- gACguCUUGGaCgUGGCCCAgUGGga -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 72030 | 0.7 | 0.697879 |
Target: 5'- -cGCGuGGCCUGCACCaGGUCcuggugcagACCCUu -3' miRNA: 3'- gaCGUcUUGGACGUGGcCCAG---------UGGGA- -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 66087 | 0.69 | 0.736041 |
Target: 5'- -aGC-GAGcCCUGCGuuGGGcCGCCCUc -3' miRNA: 3'- gaCGuCUU-GGACGUggCCCaGUGGGA- -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 186747 | 0.69 | 0.736041 |
Target: 5'- aUGUAGAACCgguUGCGCCGGa--ACCCc -3' miRNA: 3'- gACGUCUUGG---ACGUGGCCcagUGGGa -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 109735 | 0.69 | 0.745394 |
Target: 5'- -gGUGGGACUUGUGCaGGGUCACCg- -3' miRNA: 3'- gaCGUCUUGGACGUGgCCCAGUGGga -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 65352 | 0.69 | 0.763816 |
Target: 5'- aUGCAGGACgUGCuguCCGGGgagacggCGCgCCg -3' miRNA: 3'- gACGUCUUGgACGu--GGCCCa------GUG-GGa -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 92098 | 0.67 | 0.824481 |
Target: 5'- -cGCAGGGCggUGCcCCGGGUCggaACCCc -3' miRNA: 3'- gaCGUCUUGg-ACGuGGCCCAG---UGGGa -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 156380 | 0.68 | 0.81624 |
Target: 5'- cCUGCAGcGCCUG-ACCGaGGgccgcuucgcCACCCUg -3' miRNA: 3'- -GACGUCuUGGACgUGGC-CCa---------GUGGGA- -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 22604 | 0.68 | 0.807845 |
Target: 5'- cCUGCGGucGCCugaccuccguUGC-CCGGGaCACCCa -3' miRNA: 3'- -GACGUCu-UGG----------ACGuGGCCCaGUGGGa -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 113214 | 0.68 | 0.807845 |
Target: 5'- -aGCAGuACCUGCGCuCGGGccUCACgUg -3' miRNA: 3'- gaCGUCuUGGACGUG-GCCC--AGUGgGa -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 138035 | 0.68 | 0.781807 |
Target: 5'- gCUGcCGGcGCaCgggGCugUGGGUCGCCCg -3' miRNA: 3'- -GAC-GUCuUG-Ga--CGugGCCCAGUGGGa -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 123199 | 0.68 | 0.772869 |
Target: 5'- -gGCGGAACga-CACCGGGUCGCUg- -3' miRNA: 3'- gaCGUCUUGgacGUGGCCCAGUGGga -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 116024 | 0.7 | 0.668694 |
Target: 5'- -aGCuGGugCUGCcCUGGGUCAUCCc -3' miRNA: 3'- gaCGuCUugGACGuGGCCCAGUGGGa -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 120606 | 0.73 | 0.513426 |
Target: 5'- aCUGcCAGGugUUGCGCCuGGUCACCa- -3' miRNA: 3'- -GAC-GUCUugGACGUGGcCCAGUGGga -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 17640 | 0.73 | 0.494837 |
Target: 5'- gCUGCGGAgcuacguacGCCaGCACCGGGgCACCa- -3' miRNA: 3'- -GACGUCU---------UGGaCGUGGCCCaGUGGga -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 140627 | 0.76 | 0.38593 |
Target: 5'- cCUGCagcgguacacggccgAGAGCCUGCGCCuGG-CGCCCUa -3' miRNA: 3'- -GACG---------------UCUUGGACGUGGcCCaGUGGGA- -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 6686 | 0.77 | 0.321965 |
Target: 5'- gCUGCAGGGCCUGCGCCcgcgagcgcugcuGGGUCucGCCg- -3' miRNA: 3'- -GACGUCUUGGACGUGG-------------CCCAG--UGGga -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 161192 | 0.78 | 0.282425 |
Target: 5'- -aGCAGAcgacGCCgagGCGCCGcGGUCGCCCc -3' miRNA: 3'- gaCGUCU----UGGa--CGUGGC-CCAGUGGGa -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 59692 | 0.8 | 0.209016 |
Target: 5'- cCUGgAGAACCUGgACuCGGGUCGCCUg -3' miRNA: 3'- -GACgUCUUGGACgUG-GCCCAGUGGGa -5' |
|||||||
14148 | 5' | -58.5 | NC_003521.1 | + | 34246 | 0.66 | 0.897004 |
Target: 5'- -aGcCGGGGCCUGUcguGCCccGUCGCCCUa -3' miRNA: 3'- gaC-GUCUUGGACG---UGGccCAGUGGGA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home