miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14151 3' -51.7 NC_003521.1 + 105959 1.09 0.009903
Target:  5'- gAUCGCGCAGAACAACGUGCUCAUCACg -3'
miRNA:   3'- -UAGCGCGUCUUGUUGCACGAGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 194133 0.78 0.578471
Target:  5'- cAUCGUGCGGcAguACGUGCUCAUCGa -3'
miRNA:   3'- -UAGCGCGUCuUguUGCACGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 100110 0.77 0.651027
Target:  5'- cUCGCGCGGGAUGACGU--UCGUCACc -3'
miRNA:   3'- uAGCGCGUCUUGUUGCAcgAGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 137635 0.75 0.770863
Target:  5'- cUCGCGCAucGCGgucgaguACGUGCUCAUuCGCg -3'
miRNA:   3'- uAGCGCGUcuUGU-------UGCACGAGUA-GUG- -5'
14151 3' -51.7 NC_003521.1 + 43192 0.73 0.851232
Target:  5'- -cCGCGaccuGuGCAACGUGCUCAUCGg -3'
miRNA:   3'- uaGCGCgu--CuUGUUGCACGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 225529 0.73 0.851232
Target:  5'- cGUCGCGCGu--CGACGaacGCUCGUCACc -3'
miRNA:   3'- -UAGCGCGUcuuGUUGCa--CGAGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 197870 0.73 0.859136
Target:  5'- gGUCGCGCucgcugggcugcAGGcgGCAGCGgauguUGCUCGUCACc -3'
miRNA:   3'- -UAGCGCG------------UCU--UGUUGC-----ACGAGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 91336 0.72 0.874304
Target:  5'- -aCGCGCAG-GCGAgGUGCUgGUCGg -3'
miRNA:   3'- uaGCGCGUCuUGUUgCACGAgUAGUg -5'
14151 3' -51.7 NC_003521.1 + 149939 0.72 0.881556
Target:  5'- -aUGCGCAGuuCAACGUGCgCAUgCGCg -3'
miRNA:   3'- uaGCGCGUCuuGUUGCACGaGUA-GUG- -5'
14151 3' -51.7 NC_003521.1 + 116003 0.72 0.888579
Target:  5'- cUCGCGCAgGAGCAGCGUcuccaggccGCgguggaagagCAUCACg -3'
miRNA:   3'- uAGCGCGU-CUUGUUGCA---------CGa---------GUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 74133 0.72 0.895369
Target:  5'- -cCGUGCAGGACGACGUGgCgCGcCACg -3'
miRNA:   3'- uaGCGCGUCUUGUUGCAC-GaGUaGUG- -5'
14151 3' -51.7 NC_003521.1 + 52191 0.72 0.901922
Target:  5'- -cCGC-CGGGGCGGCGaGCUCAUCAg -3'
miRNA:   3'- uaGCGcGUCUUGUUGCaCGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 102729 0.72 0.901922
Target:  5'- --gGCGCAGAA-GACGUGCUgGUCGu -3'
miRNA:   3'- uagCGCGUCUUgUUGCACGAgUAGUg -5'
14151 3' -51.7 NC_003521.1 + 223297 0.71 0.914306
Target:  5'- aGUCGCaGCGGAugG-CGUccucgcagcGCUCGUCGCg -3'
miRNA:   3'- -UAGCG-CGUCUugUuGCA---------CGAGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 183781 0.71 0.914306
Target:  5'- -aCGgGCAGGACGagugccugggcgGCGUGUUCAUcCGCg -3'
miRNA:   3'- uaGCgCGUCUUGU------------UGCACGAGUA-GUG- -5'
14151 3' -51.7 NC_003521.1 + 78198 0.71 0.920131
Target:  5'- -gCGUGCGGAGCGggcGCGgcGCUCGUCGg -3'
miRNA:   3'- uaGCGCGUCUUGU---UGCa-CGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 152764 0.71 0.920131
Target:  5'- -gCGCGCGGAACGGCGUcGcCUCcugCGCc -3'
miRNA:   3'- uaGCGCGUCUUGUUGCA-C-GAGua-GUG- -5'
14151 3' -51.7 NC_003521.1 + 64219 0.71 0.920131
Target:  5'- -aCGCaGCAGcgcGAgGACGUGCUCAUC-Ca -3'
miRNA:   3'- uaGCG-CGUC---UUgUUGCACGAGUAGuG- -5'
14151 3' -51.7 NC_003521.1 + 165971 0.7 0.93613
Target:  5'- uGUCGUGCAGGucguGCAGCGUgaggcgcgggacGC-CGUCGCg -3'
miRNA:   3'- -UAGCGCGUCU----UGUUGCA------------CGaGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 33858 0.7 0.940971
Target:  5'- uUCGCuucGUGGAACGccACGgGCUCAUCGCc -3'
miRNA:   3'- uAGCG---CGUCUUGU--UGCaCGAGUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.