miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14151 3' -51.7 NC_003521.1 + 206718 0.68 0.976564
Target:  5'- -aCGUGCGG-GCGGCGgGCUCcuAUCGCg -3'
miRNA:   3'- uaGCGCGUCuUGUUGCaCGAG--UAGUG- -5'
14151 3' -51.7 NC_003521.1 + 121215 0.7 0.9469
Target:  5'- cUCGCGCAGGGCGcgcagcuccaggaagAUGUGCuguccgcUCAUCAg -3'
miRNA:   3'- uAGCGCGUCUUGU---------------UGCACG-------AGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 59087 0.7 0.949924
Target:  5'- gAUCGCGCGGccgcuuggcCAGCGUGCgcgcgucCAUCAUg -3'
miRNA:   3'- -UAGCGCGUCuu-------GUUGCACGa------GUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 221817 0.7 0.949924
Target:  5'- cGUCG-GCGGGGCgGGCGUGUcucccUCGUCGCg -3'
miRNA:   3'- -UAGCgCGUCUUG-UUGCACG-----AGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 165943 0.7 0.957923
Target:  5'- cUCGCGCAGcAGCGccguguCGUGCUCGg-GCa -3'
miRNA:   3'- uAGCGCGUC-UUGUu-----GCACGAGUagUG- -5'
14151 3' -51.7 NC_003521.1 + 123577 0.7 0.957923
Target:  5'- aGUCGUGCAGcgccGCGugauGCGUGCccuugCGUCGCa -3'
miRNA:   3'- -UAGCGCGUCu---UGU----UGCACGa----GUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 162844 0.69 0.965001
Target:  5'- cAUCGUGCAGAACGGCGaGC-CcgCGg -3'
miRNA:   3'- -UAGCGCGUCUUGUUGCaCGaGuaGUg -5'
14151 3' -51.7 NC_003521.1 + 113129 0.69 0.968206
Target:  5'- -gUGCGCG--ACGAUGUGCUC-UCGCu -3'
miRNA:   3'- uaGCGCGUcuUGUUGCACGAGuAGUG- -5'
14151 3' -51.7 NC_003521.1 + 34603 0.69 0.971197
Target:  5'- -gCGCGCAGAugGAcuCGUGCacgggGUCGCa -3'
miRNA:   3'- uaGCGCGUCUugUU--GCACGag---UAGUG- -5'
14151 3' -51.7 NC_003521.1 + 187698 0.7 0.945119
Target:  5'- cAUCGCGCAGGACcuucugcgucgccAGCGguacgugacuUGuCUCAUCGCc -3'
miRNA:   3'- -UAGCGCGUCUUG-------------UUGC----------AC-GAGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 152764 0.71 0.920131
Target:  5'- -gCGCGCGGAACGGCGUcGcCUCcugCGCc -3'
miRNA:   3'- uaGCGCGUCUUGUUGCA-C-GAGua-GUG- -5'
14151 3' -51.7 NC_003521.1 + 64219 0.71 0.920131
Target:  5'- -aCGCaGCAGcgcGAgGACGUGCUCAUC-Ca -3'
miRNA:   3'- uaGCG-CGUC---UUgUUGCACGAGUAGuG- -5'
14151 3' -51.7 NC_003521.1 + 43192 0.73 0.851232
Target:  5'- -cCGCGaccuGuGCAACGUGCUCAUCGg -3'
miRNA:   3'- uaGCGCgu--CuUGUUGCACGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 225529 0.73 0.851232
Target:  5'- cGUCGCGCGu--CGACGaacGCUCGUCACc -3'
miRNA:   3'- -UAGCGCGUcuuGUUGCa--CGAGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 91336 0.72 0.874304
Target:  5'- -aCGCGCAG-GCGAgGUGCUgGUCGg -3'
miRNA:   3'- uaGCGCGUCuUGUUgCACGAgUAGUg -5'
14151 3' -51.7 NC_003521.1 + 116003 0.72 0.888579
Target:  5'- cUCGCGCAgGAGCAGCGUcuccaggccGCgguggaagagCAUCACg -3'
miRNA:   3'- uAGCGCGU-CUUGUUGCA---------CGa---------GUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 74133 0.72 0.895369
Target:  5'- -cCGUGCAGGACGACGUGgCgCGcCACg -3'
miRNA:   3'- uaGCGCGUCUUGUUGCAC-GaGUaGUG- -5'
14151 3' -51.7 NC_003521.1 + 102729 0.72 0.901922
Target:  5'- --gGCGCAGAA-GACGUGCUgGUCGu -3'
miRNA:   3'- uagCGCGUCUUgUUGCACGAgUAGUg -5'
14151 3' -51.7 NC_003521.1 + 52191 0.72 0.901922
Target:  5'- -cCGC-CGGGGCGGCGaGCUCAUCAg -3'
miRNA:   3'- uaGCGcGUCUUGUUGCaCGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 223297 0.71 0.914306
Target:  5'- aGUCGCaGCGGAugG-CGUccucgcagcGCUCGUCGCg -3'
miRNA:   3'- -UAGCG-CGUCUugUuGCA---------CGAGUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.