miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14151 3' -51.7 NC_003521.1 + 26245 0.66 0.995569
Target:  5'- cGUCGCGCacGGAACGccaGCGcUGCUgCAcCACc -3'
miRNA:   3'- -UAGCGCG--UCUUGU---UGC-ACGA-GUaGUG- -5'
14151 3' -51.7 NC_003521.1 + 28911 0.66 0.993118
Target:  5'- -cUGCGCGacuACAACGUGCUCuUCu- -3'
miRNA:   3'- uaGCGCGUcu-UGUUGCACGAGuAGug -5'
14151 3' -51.7 NC_003521.1 + 33278 0.66 0.994033
Target:  5'- gAUCGUGCAGcAGCuGCGagaGCUCGUaCAUg -3'
miRNA:   3'- -UAGCGCGUC-UUGuUGCa--CGAGUA-GUG- -5'
14151 3' -51.7 NC_003521.1 + 33858 0.7 0.940971
Target:  5'- uUCGCuucGUGGAACGccACGgGCUCAUCGCc -3'
miRNA:   3'- uAGCG---CGUCUUGU--UGCaCGAGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 34603 0.69 0.971197
Target:  5'- -gCGCGCAGAugGAcuCGUGCacgggGUCGCa -3'
miRNA:   3'- uaGCGCGUCUugUU--GCACGag---UAGUG- -5'
14151 3' -51.7 NC_003521.1 + 36964 0.7 0.945568
Target:  5'- cGUCGCaGCGGAGCGG-GUGCUCGgcgGCg -3'
miRNA:   3'- -UAGCG-CGUCUUGUUgCACGAGUag-UG- -5'
14151 3' -51.7 NC_003521.1 + 37553 0.7 0.940971
Target:  5'- gGUCGCgGCGGAAUcuccucguaGAUGUGCUCuUCAUc -3'
miRNA:   3'- -UAGCG-CGUCUUG---------UUGCACGAGuAGUG- -5'
14151 3' -51.7 NC_003521.1 + 38290 0.66 0.994033
Target:  5'- -gCGCGCAGcAGguGCGagaGCUCGUCGg -3'
miRNA:   3'- uaGCGCGUC-UUguUGCa--CGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 43192 0.73 0.851232
Target:  5'- -cCGCGaccuGuGCAACGUGCUCAUCGg -3'
miRNA:   3'- uaGCGCgu--CuUGUUGCACGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 46535 0.66 0.993118
Target:  5'- gGUCGUGCuGAcCAGCuUGaUCAUCACg -3'
miRNA:   3'- -UAGCGCGuCUuGUUGcACgAGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 52191 0.72 0.901922
Target:  5'- -cCGC-CGGGGCGGCGaGCUCAUCAg -3'
miRNA:   3'- uaGCGcGUCUUGUUGCaCGAGUAGUg -5'
14151 3' -51.7 NC_003521.1 + 54306 0.66 0.993118
Target:  5'- -cCaCGUAGAGCAGCGcgucgUGCUcCGUCACc -3'
miRNA:   3'- uaGcGCGUCUUGUUGC-----ACGA-GUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 59087 0.7 0.949924
Target:  5'- gAUCGCGCGGccgcuuggcCAGCGUGCgcgcgucCAUCAUg -3'
miRNA:   3'- -UAGCGCGUCuu-------GUUGCACGa------GUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 59814 0.66 0.994847
Target:  5'- --gGCGCuGGACcGCGUGCUgcUCAUg -3'
miRNA:   3'- uagCGCGuCUUGuUGCACGAguAGUG- -5'
14151 3' -51.7 NC_003521.1 + 62565 0.66 0.994847
Target:  5'- -gCGCGCGGAAUcaugcugcgagAugGUGaaCAUCGCc -3'
miRNA:   3'- uaGCGCGUCUUG-----------UugCACgaGUAGUG- -5'
14151 3' -51.7 NC_003521.1 + 64219 0.71 0.920131
Target:  5'- -aCGCaGCAGcgcGAgGACGUGCUCAUC-Ca -3'
miRNA:   3'- uaGCG-CGUC---UUgUUGCACGAGUAGuG- -5'
14151 3' -51.7 NC_003521.1 + 74016 0.69 0.968206
Target:  5'- gAUCGuCGCAGcAGCAGCGgcgGCggCAUCGu -3'
miRNA:   3'- -UAGC-GCGUC-UUGUUGCa--CGa-GUAGUg -5'
14151 3' -51.7 NC_003521.1 + 74133 0.72 0.895369
Target:  5'- -cCGUGCAGGACGACGUGgCgCGcCACg -3'
miRNA:   3'- uaGCGCGUCUUGUUGCAC-GaGUaGUG- -5'
14151 3' -51.7 NC_003521.1 + 75604 0.68 0.981158
Target:  5'- uUCGCGUucGGGCGGCGccacgGCUCAgUCGCc -3'
miRNA:   3'- uAGCGCGu-CUUGUUGCa----CGAGU-AGUG- -5'
14151 3' -51.7 NC_003521.1 + 75904 0.66 0.994847
Target:  5'- uGUCgGCGUGGAugGGCacguuGUGCUCGcgCACg -3'
miRNA:   3'- -UAG-CGCGUCUugUUG-----CACGAGUa-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.