miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14151 5' -55.8 NC_003521.1 + 105994 1.1 0.004769
Target:  5'- gCCGCGAGGAGUUCGACAUCCUGCGCUa -3'
miRNA:   3'- -GGCGCUCCUCAAGCUGUAGGACGCGA- -5'
14151 5' -55.8 NC_003521.1 + 22385 0.77 0.476333
Target:  5'- -aGUGGGGucuuGUUCGugGUCCUGUGCg -3'
miRNA:   3'- ggCGCUCCu---CAAGCugUAGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 25575 0.75 0.590362
Target:  5'- gCCGCGGGGAcagGUgggcUUGuuCAUCCUGCGCa -3'
miRNA:   3'- -GGCGCUCCU---CA----AGCu-GUAGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 16724 0.72 0.727234
Target:  5'- gCGCGGcGAGUUCGGCGaCCgccgGCGCg -3'
miRNA:   3'- gGCGCUcCUCAAGCUGUaGGa---CGCGa -5'
14151 5' -55.8 NC_003521.1 + 23992 0.72 0.755363
Target:  5'- gCCGCGGGcug--CGACcUCCUGCGCg -3'
miRNA:   3'- -GGCGCUCcucaaGCUGuAGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 48118 0.71 0.791417
Target:  5'- aUCGCGGGacGAGcgCGACGaCCUGUGCa -3'
miRNA:   3'- -GGCGCUC--CUCaaGCUGUaGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 213059 0.71 0.800979
Target:  5'- aCGCGAGGAGcugcgccgucgggaCGACAUCgCgGCGCUc -3'
miRNA:   3'- gGCGCUCCUCaa------------GCUGUAG-GaCGCGA- -5'
14151 5' -55.8 NC_003521.1 + 136616 0.71 0.808675
Target:  5'- gUGCGAGGAGgcCGAgAcgCUGCGCUa -3'
miRNA:   3'- gGCGCUCCUCaaGCUgUagGACGCGA- -5'
14151 5' -55.8 NC_003521.1 + 213696 0.7 0.856654
Target:  5'- cCCGCaaccucauGGAGUUCGcccGCAccggCCUGCGCg -3'
miRNA:   3'- -GGCGcu------CCUCAAGC---UGUa---GGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 100782 0.7 0.856654
Target:  5'- gCGCGAGGAGgaCGAaCAgaagagggucgCCUGgGCUg -3'
miRNA:   3'- gGCGCUCCUCaaGCU-GUa----------GGACgCGA- -5'
14151 5' -55.8 NC_003521.1 + 200311 0.7 0.856654
Target:  5'- gCCGCugcugGAGGAGUUCGAgA---UGCGCUg -3'
miRNA:   3'- -GGCG-----CUCCUCAAGCUgUaggACGCGA- -5'
14151 5' -55.8 NC_003521.1 + 137236 0.69 0.884957
Target:  5'- aCCGUgGAGGAGUaCGugcGCAgcUUCUGCGCg -3'
miRNA:   3'- -GGCG-CUCCUCAaGC---UGU--AGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 223956 0.69 0.884957
Target:  5'- gCCGCGGGGAacgcacGUcguaGACGUCCgccUGCGCc -3'
miRNA:   3'- -GGCGCUCCU------CAag--CUGUAGG---ACGCGa -5'
14151 5' -55.8 NC_003521.1 + 117413 0.69 0.884957
Target:  5'- aCCGgGuGGAGggCGGCAUCUcggguccGCGCg -3'
miRNA:   3'- -GGCgCuCCUCaaGCUGUAGGa------CGCGa -5'
14151 5' -55.8 NC_003521.1 + 111383 0.69 0.891525
Target:  5'- -gGCGAGGAgauGUUCGAgG-CgCUGCGCa -3'
miRNA:   3'- ggCGCUCCU---CAAGCUgUaG-GACGCGa -5'
14151 5' -55.8 NC_003521.1 + 72986 0.69 0.89788
Target:  5'- gCCGCGGGGGGccUGGCcgcUCCUGCucugGCUg -3'
miRNA:   3'- -GGCGCUCCUCaaGCUGu--AGGACG----CGA- -5'
14151 5' -55.8 NC_003521.1 + 132392 0.68 0.90281
Target:  5'- cCCGCGAGGucaucCGGCAgacgcuguuucgCCUGUGCg -3'
miRNA:   3'- -GGCGCUCCucaa-GCUGUa-----------GGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 60514 0.68 0.904021
Target:  5'- cCCGgGAGGAGcugcaCGGCAUCUgggagacgGUGCUg -3'
miRNA:   3'- -GGCgCUCCUCaa---GCUGUAGGa-------CGCGA- -5'
14151 5' -55.8 NC_003521.1 + 155174 0.68 0.906416
Target:  5'- uCgGCGAccugcucaaguacauGGAGUUCGGCAUCC--CGCUc -3'
miRNA:   3'- -GgCGCU---------------CCUCAAGCUGUAGGacGCGA- -5'
14151 5' -55.8 NC_003521.1 + 113184 0.68 0.921131
Target:  5'- gCCGCGAGGuGcccgucUUCGugcacgagcaGCAguaCCUGCGCUc -3'
miRNA:   3'- -GGCGCUCCuC------AAGC----------UGUa--GGACGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.