miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14151 5' -55.8 NC_003521.1 + 5918 0.66 0.972662
Target:  5'- aCCGCGAGGggcuacgaugacGGUUcCGACGaaacaUCCaGCGUc -3'
miRNA:   3'- -GGCGCUCC------------UCAA-GCUGU-----AGGaCGCGa -5'
14151 5' -55.8 NC_003521.1 + 11787 0.66 0.963891
Target:  5'- gCUGCGAGGAGUcccUCGAgccCCUagggGUGCUg -3'
miRNA:   3'- -GGCGCUCCUCA---AGCUguaGGA----CGCGA- -5'
14151 5' -55.8 NC_003521.1 + 16724 0.72 0.727234
Target:  5'- gCGCGGcGAGUUCGGCGaCCgccgGCGCg -3'
miRNA:   3'- gGCGCUcCUCAAGCUGUaGGa---CGCGa -5'
14151 5' -55.8 NC_003521.1 + 18219 0.68 0.926392
Target:  5'- gCCGC--GGAGUUCcGCGagCUGCGCg -3'
miRNA:   3'- -GGCGcuCCUCAAGcUGUagGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 22385 0.77 0.476333
Target:  5'- -aGUGGGGucuuGUUCGugGUCCUGUGCg -3'
miRNA:   3'- ggCGCUCCu---CAAGCugUAGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 23992 0.72 0.755363
Target:  5'- gCCGCGGGcug--CGACcUCCUGCGCg -3'
miRNA:   3'- -GGCGCUCcucaaGCUGuAGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 25575 0.75 0.590362
Target:  5'- gCCGCGGGGAcagGUgggcUUGuuCAUCCUGCGCa -3'
miRNA:   3'- -GGCGCUCCU---CA----AGCu-GUAGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 48118 0.71 0.791417
Target:  5'- aUCGCGGGacGAGcgCGACGaCCUGUGCa -3'
miRNA:   3'- -GGCGCUC--CUCaaGCUGUaGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 49083 0.68 0.921131
Target:  5'- aCCGuCGGacGGGGggCGAUAUCCacaaagUGCGCg -3'
miRNA:   3'- -GGC-GCU--CCUCaaGCUGUAGG------ACGCGa -5'
14151 5' -55.8 NC_003521.1 + 54454 0.66 0.96993
Target:  5'- gCCGaCGGGGcgauGGUuaUCGACG-CCUGcCGCa -3'
miRNA:   3'- -GGC-GCUCC----UCA--AGCUGUaGGAC-GCGa -5'
14151 5' -55.8 NC_003521.1 + 59569 0.66 0.963891
Target:  5'- gCCGCG-GGGGUUU--CGUCCgagaaGCGCg -3'
miRNA:   3'- -GGCGCuCCUCAAGcuGUAGGa----CGCGa -5'
14151 5' -55.8 NC_003521.1 + 60138 0.67 0.953322
Target:  5'- -aGCGAGGAGgugUCGAgCAcgcaggCCUcGCGCc -3'
miRNA:   3'- ggCGCUCCUCa--AGCU-GUa-----GGA-CGCGa -5'
14151 5' -55.8 NC_003521.1 + 60514 0.68 0.904021
Target:  5'- cCCGgGAGGAGcugcaCGGCAUCUgggagacgGUGCUg -3'
miRNA:   3'- -GGCgCUCCUCaa---GCUGUAGGa-------CGCGA- -5'
14151 5' -55.8 NC_003521.1 + 62422 0.66 0.963891
Target:  5'- aCCaGUGucuGGGcaucUUCGACuUCCUGCGCUa -3'
miRNA:   3'- -GG-CGCu--CCUc---AAGCUGuAGGACGCGA- -5'
14151 5' -55.8 NC_003521.1 + 64674 0.66 0.967008
Target:  5'- aCCGggcucCGAGGAGaUgGAgAaCCUGCGCg -3'
miRNA:   3'- -GGC-----GCUCCUCaAgCUgUaGGACGCGa -5'
14151 5' -55.8 NC_003521.1 + 72986 0.69 0.89788
Target:  5'- gCCGCGGGGGGccUGGCcgcUCCUGCucugGCUg -3'
miRNA:   3'- -GGCGCUCCUCaaGCUGu--AGGACG----CGA- -5'
14151 5' -55.8 NC_003521.1 + 100732 0.67 0.949379
Target:  5'- -gGCGGGGGGUucaugUCGuCGUCCgGgGCUu -3'
miRNA:   3'- ggCGCUCCUCA-----AGCuGUAGGaCgCGA- -5'
14151 5' -55.8 NC_003521.1 + 100782 0.7 0.856654
Target:  5'- gCGCGAGGAGgaCGAaCAgaagagggucgCCUGgGCUg -3'
miRNA:   3'- gGCGCUCCUCaaGCU-GUa----------GGACgCGA- -5'
14151 5' -55.8 NC_003521.1 + 101118 0.68 0.921131
Target:  5'- cCCGCGAGGGGggcgggUCGGCGggcaCgcggaaaGCGCg -3'
miRNA:   3'- -GGCGCUCCUCa-----AGCUGUag--Ga------CGCGa -5'
14151 5' -55.8 NC_003521.1 + 103207 0.68 0.921131
Target:  5'- gCGCGAGcGGUa-GGCGUCCaGCGCg -3'
miRNA:   3'- gGCGCUCcUCAagCUGUAGGaCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.