Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14151 | 5' | -55.8 | NC_003521.1 | + | 62422 | 0.66 | 0.963891 |
Target: 5'- aCCaGUGucuGGGcaucUUCGACuUCCUGCGCUa -3' miRNA: 3'- -GG-CGCu--CCUc---AAGCUGuAGGACGCGA- -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 100732 | 0.67 | 0.949379 |
Target: 5'- -gGCGGGGGGUucaugUCGuCGUCCgGgGCUu -3' miRNA: 3'- ggCGCUCCUCA-----AGCuGUAGGaCgCGA- -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 60138 | 0.67 | 0.953322 |
Target: 5'- -aGCGAGGAGgugUCGAgCAcgcaggCCUcGCGCc -3' miRNA: 3'- ggCGCUCCUCa--AGCU-GUa-----GGA-CGCGa -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 119450 | 0.67 | 0.953322 |
Target: 5'- cUCGCGAuGGAGgcgCGACAgugugaagCC-GCGCg -3' miRNA: 3'- -GGCGCU-CCUCaa-GCUGUa-------GGaCGCGa -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 211461 | 0.67 | 0.957052 |
Target: 5'- aCCGCGGccGcGGGUUCGcacucCGUCCagUGCGCg -3' miRNA: 3'- -GGCGCU--C-CUCAAGCu----GUAGG--ACGCGa -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 125523 | 0.66 | 0.960574 |
Target: 5'- gUGCuGAGGA--UCGGCAgcgcuUCCUGCGUc -3' miRNA: 3'- gGCG-CUCCUcaAGCUGU-----AGGACGCGa -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 59569 | 0.66 | 0.963891 |
Target: 5'- gCCGCG-GGGGUUU--CGUCCgagaaGCGCg -3' miRNA: 3'- -GGCGCuCCUCAAGcuGUAGGa----CGCGa -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 144190 | 0.66 | 0.963891 |
Target: 5'- gCCGCGcgcuGGAGaaCGGCAagCUGCaGCa -3' miRNA: 3'- -GGCGCu---CCUCaaGCUGUagGACG-CGa -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 164824 | 0.66 | 0.963891 |
Target: 5'- cCCGCgGGGGAGgaggaacCGGCggCCgGCGCc -3' miRNA: 3'- -GGCG-CUCCUCaa-----GCUGuaGGaCGCGa -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 140508 | 0.67 | 0.945221 |
Target: 5'- cCCGCGucacucagcGGGGUcUCGACGUCacuCUGUGCc -3' miRNA: 3'- -GGCGCu--------CCUCA-AGCUGUAG---GACGCGa -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 149350 | 0.68 | 0.931432 |
Target: 5'- gCGCGAGG---UCuGCuUCCUGCGCa -3' miRNA: 3'- gGCGCUCCucaAGcUGuAGGACGCGa -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 113184 | 0.68 | 0.921131 |
Target: 5'- gCCGCGAGGuGcccgucUUCGugcacgagcaGCAguaCCUGCGCUc -3' miRNA: 3'- -GGCGCUCCuC------AAGC----------UGUa--GGACGCGA- -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 25575 | 0.75 | 0.590362 |
Target: 5'- gCCGCGGGGAcagGUgggcUUGuuCAUCCUGCGCa -3' miRNA: 3'- -GGCGCUCCU---CA----AGCu-GUAGGACGCGa -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 136616 | 0.71 | 0.808675 |
Target: 5'- gUGCGAGGAGgcCGAgAcgCUGCGCUa -3' miRNA: 3'- gGCGCUCCUCaaGCUgUagGACGCGA- -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 100782 | 0.7 | 0.856654 |
Target: 5'- gCGCGAGGAGgaCGAaCAgaagagggucgCCUGgGCUg -3' miRNA: 3'- gGCGCUCCUCaaGCU-GUa----------GGACgCGA- -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 132392 | 0.68 | 0.90281 |
Target: 5'- cCCGCGAGGucaucCGGCAgacgcuguuucgCCUGUGCg -3' miRNA: 3'- -GGCGCUCCucaa-GCUGUa-----------GGACGCGa -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 60514 | 0.68 | 0.904021 |
Target: 5'- cCCGgGAGGAGcugcaCGGCAUCUgggagacgGUGCUg -3' miRNA: 3'- -GGCgCUCCUCaa---GCUGUAGGa-------CGCGA- -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 155174 | 0.68 | 0.906416 |
Target: 5'- uCgGCGAccugcucaaguacauGGAGUUCGGCAUCC--CGCUc -3' miRNA: 3'- -GgCGCU---------------CCUCAAGCUGUAGGacGCGA- -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 49083 | 0.68 | 0.921131 |
Target: 5'- aCCGuCGGacGGGGggCGAUAUCCacaaagUGCGCg -3' miRNA: 3'- -GGC-GCU--CCUCaaGCUGUAGG------ACGCGa -5' |
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14151 | 5' | -55.8 | NC_003521.1 | + | 101118 | 0.68 | 0.921131 |
Target: 5'- cCCGCGAGGGGggcgggUCGGCGggcaCgcggaaaGCGCg -3' miRNA: 3'- -GGCGCUCCUCa-----AGCUGUag--Ga------CGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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