miRNA display CGI


Results 41 - 60 of 180 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14183 3' -57.6 NC_003521.1 + 53383 0.71 0.72368
Target:  5'- cGCGGCGCaccagcuucugcagCUCCUUgcgggCgUCGggCGCCa -3'
miRNA:   3'- -CGCCGCG--------------GAGGAGaa---GgAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 4330 0.71 0.726495
Target:  5'- gGUGGCugguCCUCCUCggUCUCGgacggaccggUUCGCCg -3'
miRNA:   3'- -CGCCGc---GGAGGAGaaGGAGC----------AAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 121032 0.71 0.735827
Target:  5'- gGCGGCGCCgaCCUCgucgCCgcug-CGCCg -3'
miRNA:   3'- -CGCCGCGGa-GGAGaa--GGagcaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 68373 0.71 0.745079
Target:  5'- cCGGCccuGCCUCCcCUcUCCUCGU-CGUCu -3'
miRNA:   3'- cGCCG---CGGAGGaGA-AGGAGCAaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 119065 0.71 0.745079
Target:  5'- aGC-GCuCCUCCUCUUCCUCuucuuccuccUCGCCu -3'
miRNA:   3'- -CGcCGcGGAGGAGAAGGAGca--------AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 53054 0.71 0.745079
Target:  5'- gGCGGCG-UUCUUCUUUgaUCGggCGCCg -3'
miRNA:   3'- -CGCCGCgGAGGAGAAGg-AGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 158012 0.7 0.754241
Target:  5'- cCGGUGcCCUCCUCUcgucggcuUCUUCG-UCGUCc -3'
miRNA:   3'- cGCCGC-GGAGGAGA--------AGGAGCaAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 110530 0.7 0.754241
Target:  5'- cGCGGCGCCgcggCCUCgcCCagGUa-GCCg -3'
miRNA:   3'- -CGCCGCGGa---GGAGaaGGagCAagCGG- -5'
14183 3' -57.6 NC_003521.1 + 89552 0.7 0.754241
Target:  5'- uGCGG-GCCcacUCgUCgcgcUCCUCGUcgUCGCCg -3'
miRNA:   3'- -CGCCgCGG---AGgAGa---AGGAGCA--AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 47976 0.7 0.772265
Target:  5'- cGCGGCGUCgCUUCUcgUCCaCGgacgCGCCg -3'
miRNA:   3'- -CGCCGCGGaGGAGA--AGGaGCaa--GCGG- -5'
14183 3' -57.6 NC_003521.1 + 168399 0.7 0.772265
Target:  5'- aCGGCGaggaCUcgcCCUCUUCCUCaGUgccucCGCCg -3'
miRNA:   3'- cGCCGCg---GA---GGAGAAGGAG-CAa----GCGG- -5'
14183 3' -57.6 NC_003521.1 + 84656 0.7 0.781112
Target:  5'- cGUGG-GUCUCCUCcgCCUCGccaccgUCGUCg -3'
miRNA:   3'- -CGCCgCGGAGGAGaaGGAGCa-----AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 144991 0.7 0.789838
Target:  5'- aGCGGCauGCCaCCgaggCCUCGcgCGCCg -3'
miRNA:   3'- -CGCCG--CGGaGGagaaGGAGCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 186666 0.7 0.789838
Target:  5'- aGgGGCccccaGCaCUCCUCgUCCUCuccUUCGCCg -3'
miRNA:   3'- -CgCCG-----CG-GAGGAGaAGGAGc--AAGCGG- -5'
14183 3' -57.6 NC_003521.1 + 150580 0.7 0.789838
Target:  5'- gGCGGCGCggCUCCUCcUCCUCacuaucaCGUCc -3'
miRNA:   3'- -CGCCGCG--GAGGAGaAGGAGcaa----GCGG- -5'
14183 3' -57.6 NC_003521.1 + 7100 0.7 0.789838
Target:  5'- gGCGGCGuCCUCCUUcUCCa-GgcCGCUg -3'
miRNA:   3'- -CGCCGC-GGAGGAGaAGGagCaaGCGG- -5'
14183 3' -57.6 NC_003521.1 + 151882 0.7 0.789838
Target:  5'- gGCGGCGCuCUCgCUCUgugaUCGcugcUCGCCc -3'
miRNA:   3'- -CGCCGCG-GAG-GAGAagg-AGCa---AGCGG- -5'
14183 3' -57.6 NC_003521.1 + 236859 0.69 0.798437
Target:  5'- aCGGUGCCccgggUCCUCcgcUUCUUCGgauaCGCCg -3'
miRNA:   3'- cGCCGCGG-----AGGAG---AAGGAGCaa--GCGG- -5'
14183 3' -57.6 NC_003521.1 + 149543 0.69 0.798437
Target:  5'- gGCGGCGCgcgCUCCuUCUUCUUCcccgGUUuccCGCCc -3'
miRNA:   3'- -CGCCGCG---GAGG-AGAAGGAG----CAA---GCGG- -5'
14183 3' -57.6 NC_003521.1 + 233784 0.69 0.798437
Target:  5'- -gGGCGUCUCCgguggUCUUUCUaCGUgcagcagCGCCa -3'
miRNA:   3'- cgCCGCGGAGG-----AGAAGGA-GCAa------GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.