miRNA display CGI


Results 41 - 60 of 394 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14189 3' -58.5 NC_003521.1 + 76391 0.74 0.521307
Target:  5'- gGCCGCGGUGGcgcugcuAGCaccaGCGGCGGU-GUg -3'
miRNA:   3'- -CGGCGCUACCu------UCGg---CGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 122515 0.74 0.521307
Target:  5'- cGCgGCGgcGGGcaGGCCgGCGGCGGUgGUa -3'
miRNA:   3'- -CGgCGCuaCCU--UCGG-CGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 28837 0.74 0.530606
Target:  5'- uGCgGCGccUGGAcgacgAGCUGCGGCGG-CGCg -3'
miRNA:   3'- -CGgCGCu-ACCU-----UCGGCGCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 128245 0.74 0.530606
Target:  5'- gGUCGCGGUucagcaGGuAGGCCGUGGUGGgcagCGCg -3'
miRNA:   3'- -CGGCGCUA------CC-UUCGGCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 60691 0.74 0.530606
Target:  5'- gGCCGCGcgGGGGaCCcggggGCGGCGcggGUCGCa -3'
miRNA:   3'- -CGGCGCuaCCUUcGG-----CGCCGC---UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 77024 0.74 0.530606
Target:  5'- aGCaUGCGGUuGAGGCCgGCGGUGGUgGCg -3'
miRNA:   3'- -CG-GCGCUAcCUUCGG-CGCCGCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 47954 0.73 0.539965
Target:  5'- cGUCGCGcucGGAAGCacaaguCGCGGCG-UCGCu -3'
miRNA:   3'- -CGGCGCua-CCUUCG------GCGCCGCuAGCG- -5'
14189 3' -58.5 NC_003521.1 + 76205 0.73 0.539965
Target:  5'- gGUCGCGGUGGugguaugaguGGCgGCGGcCGGUgGCg -3'
miRNA:   3'- -CGGCGCUACCu---------UCGgCGCC-GCUAgCG- -5'
14189 3' -58.5 NC_003521.1 + 152356 0.73 0.539965
Target:  5'- cGCUGCucUGGGgccGGCCGgGGCGG-CGCg -3'
miRNA:   3'- -CGGCGcuACCU---UCGGCgCCGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 112820 0.73 0.558844
Target:  5'- gGCCGCGAccccccGGAuuCCGUGGCGggCGUc -3'
miRNA:   3'- -CGGCGCUa-----CCUucGGCGCCGCuaGCG- -5'
14189 3' -58.5 NC_003521.1 + 133169 0.73 0.558844
Target:  5'- aGCCGgGAcaccagcagUGGcGGCCuCGGCGAUCGg -3'
miRNA:   3'- -CGGCgCU---------ACCuUCGGcGCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 169620 0.73 0.558844
Target:  5'- cGCCGUGGUGGAGguguacgguGCUGuuGUGGUCGUa -3'
miRNA:   3'- -CGGCGCUACCUU---------CGGCgcCGCUAGCG- -5'
14189 3' -58.5 NC_003521.1 + 118701 0.73 0.558844
Target:  5'- aGCCGUGuuc--AGCCGCGGCGAgacgcCGCu -3'
miRNA:   3'- -CGGCGCuaccuUCGGCGCCGCUa----GCG- -5'
14189 3' -58.5 NC_003521.1 + 138025 0.73 0.568354
Target:  5'- uGCCGCccGAgcUGGcGGCCGcCGGCGccgucAUCGCg -3'
miRNA:   3'- -CGGCG--CU--ACCuUCGGC-GCCGC-----UAGCG- -5'
14189 3' -58.5 NC_003521.1 + 157040 0.73 0.568354
Target:  5'- gGgCGCGGUcGGAGGagCGCGGCGGggggCGCc -3'
miRNA:   3'- -CgGCGCUA-CCUUCg-GCGCCGCUa---GCG- -5'
14189 3' -58.5 NC_003521.1 + 124419 0.73 0.574079
Target:  5'- aGCCGCGAgaucuccucguccGGcgagacgugguuGGGCCGCGGCGGcaCGCg -3'
miRNA:   3'- -CGGCGCUa------------CC------------UUCGGCGCCGCUa-GCG- -5'
14189 3' -58.5 NC_003521.1 + 72533 0.73 0.576947
Target:  5'- aGCUGC---GGAGGCgGCGGCGAcggugucgucgucUCGCg -3'
miRNA:   3'- -CGGCGcuaCCUUCGgCGCCGCU-------------AGCG- -5'
14189 3' -58.5 NC_003521.1 + 126423 0.73 0.577904
Target:  5'- -gCGCGAUGGcGGCCa-GGCGGUCGa -3'
miRNA:   3'- cgGCGCUACCuUCGGcgCCGCUAGCg -5'
14189 3' -58.5 NC_003521.1 + 6618 0.73 0.577904
Target:  5'- aCCGUcuucGGAGGCCGCGcGCGAaCGCu -3'
miRNA:   3'- cGGCGcua-CCUUCGGCGC-CGCUaGCG- -5'
14189 3' -58.5 NC_003521.1 + 76055 0.73 0.577904
Target:  5'- cGCCGCGucacuAUGGuucGCC-CGGCGAcCGCg -3'
miRNA:   3'- -CGGCGC-----UACCuu-CGGcGCCGCUaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.