miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14209 3' -59.3 NC_003521.1 + 76076 0.67 0.839763
Target:  5'- cCGGCgaCCGcGAUGc-CCCCCUCCcGCGc -3'
miRNA:   3'- cGCCG--GGC-CUACuuGGGGGAGGaUGU- -5'
14209 3' -59.3 NC_003521.1 + 85339 0.68 0.770487
Target:  5'- cGCGGCCCGccgcaGGccggcgucucucucACCCCCUCCUu-- -3'
miRNA:   3'- -CGCCGGGCcua--CU--------------UGGGGGAGGAugu -5'
14209 3' -59.3 NC_003521.1 + 87727 0.66 0.882191
Target:  5'- cGCGcGCCCGGcggcgugGUGGGCCCCggCCcggGCc -3'
miRNA:   3'- -CGC-CGGGCC-------UACUUGGGGgaGGa--UGu -5'
14209 3' -59.3 NC_003521.1 + 90136 0.72 0.536205
Target:  5'- gGCGGaucccagcCCCGGAuacUGAuacGCCCCCUUCUugAa -3'
miRNA:   3'- -CGCC--------GGGCCU---ACU---UGGGGGAGGAugU- -5'
14209 3' -59.3 NC_003521.1 + 91800 0.66 0.869238
Target:  5'- gGCGGUUgGGc---ACCCCCcCCUGCAc -3'
miRNA:   3'- -CGCCGGgCCuacuUGGGGGaGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 92103 0.69 0.736904
Target:  5'- gGCGGugcCCCGGGUcgGAACCCCCgggUGCGg -3'
miRNA:   3'- -CGCC---GGGCCUA--CUUGGGGGaggAUGU- -5'
14209 3' -59.3 NC_003521.1 + 94032 0.67 0.807593
Target:  5'- -aGGUCCGGAUcaucguCCgUCUCCUGCAu -3'
miRNA:   3'- cgCCGGGCCUAcuu---GGgGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 94301 0.66 0.862143
Target:  5'- -gGGaCCCGGGUGGAgCCgCCguUUCUGCGg -3'
miRNA:   3'- cgCC-GGGCCUACUUgGG-GG--AGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 101154 0.67 0.82399
Target:  5'- cGCGGCgCGGucUGcguCCCUCUCCU-CAg -3'
miRNA:   3'- -CGCCGgGCCu-ACuu-GGGGGAGGAuGU- -5'
14209 3' -59.3 NC_003521.1 + 106162 0.71 0.622299
Target:  5'- aCGGCCUGGAgc-ACUUCUUCCUGCGc -3'
miRNA:   3'- cGCCGGGCCUacuUGGGGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 106950 0.67 0.815046
Target:  5'- cGCGGCCUGG-UGGACUCUCaucaaucucuuuaUCCUGg- -3'
miRNA:   3'- -CGCCGGGCCuACUUGGGGG-------------AGGAUgu -5'
14209 3' -59.3 NC_003521.1 + 112454 0.67 0.82399
Target:  5'- gGCGGCCCuGGUGGGCgCgCCCggcggggccaCCUACu -3'
miRNA:   3'- -CGCCGGGcCUACUUG-G-GGGa---------GGAUGu -5'
14209 3' -59.3 NC_003521.1 + 112909 0.66 0.889364
Target:  5'- cGCcGCCUGGGaGGGCCCCgUCacggGCAa -3'
miRNA:   3'- -CGcCGGGCCUaCUUGGGGgAGga--UGU- -5'
14209 3' -59.3 NC_003521.1 + 113992 0.67 0.831958
Target:  5'- -gGGCaCCGGcUGcAACCCUCUCCUc-- -3'
miRNA:   3'- cgCCG-GGCCuAC-UUGGGGGAGGAugu -5'
14209 3' -59.3 NC_003521.1 + 116615 0.66 0.888722
Target:  5'- uGCGGCCCGacaagguGGUGGAgUUCCUCagcgGCAg -3'
miRNA:   3'- -CGCCGGGC-------CUACUUgGGGGAGga--UGU- -5'
14209 3' -59.3 NC_003521.1 + 116730 0.66 0.889364
Target:  5'- gGCGGuCCCGGAgucGGCgCCCUUCaaACAc -3'
miRNA:   3'- -CGCC-GGGCCUac-UUG-GGGGAGgaUGU- -5'
14209 3' -59.3 NC_003521.1 + 116895 0.66 0.876143
Target:  5'- gGCGGCgcgCCGGcgGGagACCCCUUUCgcuccgACAg -3'
miRNA:   3'- -CGCCG---GGCCuaCU--UGGGGGAGGa-----UGU- -5'
14209 3' -59.3 NC_003521.1 + 119046 0.66 0.876143
Target:  5'- gGCGGCgUCGGGgugcugGAGCgCUCCUCCUc-- -3'
miRNA:   3'- -CGCCG-GGCCUa-----CUUG-GGGGAGGAugu -5'
14209 3' -59.3 NC_003521.1 + 120974 0.67 0.815866
Target:  5'- -aGGCCCGGGUGGAUaUCCgacgcaccgCCUACc -3'
miRNA:   3'- cgCCGGGCCUACUUGgGGGa--------GGAUGu -5'
14209 3' -59.3 NC_003521.1 + 122018 0.67 0.82399
Target:  5'- gGCaGCCCuGA--AACCCaCCUCCUACc -3'
miRNA:   3'- -CGcCGGGcCUacUUGGG-GGAGGAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.