miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14209 3' -59.3 NC_003521.1 + 161935 0.73 0.526856
Target:  5'- -aGGCCCGcGUGGACCCCCUgacgcgCCUGg- -3'
miRNA:   3'- cgCCGGGCcUACUUGGGGGA------GGAUgu -5'
14209 3' -59.3 NC_003521.1 + 71893 0.66 0.876143
Target:  5'- gGCGGCCCuGccu-GCgCCCUCCUcGCAu -3'
miRNA:   3'- -CGCCGGGcCuacuUGgGGGAGGA-UGU- -5'
14209 3' -59.3 NC_003521.1 + 153827 0.67 0.836661
Target:  5'- cGUGGCCCucaucaccGCCgCCUCCUACAu -3'
miRNA:   3'- -CGCCGGGccuacu--UGGgGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 124815 0.74 0.472203
Target:  5'- cGCGGCCUGGA--GACgCUgCUCCUGCGc -3'
miRNA:   3'- -CGCCGGGCCUacUUG-GGgGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 166665 0.66 0.891911
Target:  5'- aGCGGCCagCGGcaccUGGGCCCCgUggcgcgccacgucguCCUGCAc -3'
miRNA:   3'- -CGCCGG--GCCu---ACUUGGGGgA---------------GGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 149454 0.74 0.437403
Target:  5'- -gGGCCCGGGguucGGCCCCCUCCc--- -3'
miRNA:   3'- cgCCGGGCCUac--UUGGGGGAGGaugu -5'
14209 3' -59.3 NC_003521.1 + 67855 1.01 0.009191
Target:  5'- gGCGGCCCGG-UGAACCCCCUCCUACAc -3'
miRNA:   3'- -CGCCGGGCCuACUUGGGGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 138850 0.69 0.718261
Target:  5'- uGCGGCCa-GAUGGGCUgcaCCUUCUGCGu -3'
miRNA:   3'- -CGCCGGgcCUACUUGGg--GGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 153082 0.66 0.854862
Target:  5'- cGgGGCCCGGGccgGGGCCCaCCacgCCgccggGCGc -3'
miRNA:   3'- -CgCCGGGCCUa--CUUGGG-GGa--GGa----UGU- -5'
14209 3' -59.3 NC_003521.1 + 123405 0.67 0.8474
Target:  5'- cGCGGaCCCGaGAU--GCCgCCCUCCa--- -3'
miRNA:   3'- -CGCC-GGGC-CUAcuUGG-GGGAGGaugu -5'
14209 3' -59.3 NC_003521.1 + 62795 0.68 0.770487
Target:  5'- -gGGCCCGGcgucuuugacgaccGUGGccGCCUCCgUCCUACc -3'
miRNA:   3'- cgCCGGGCC--------------UACU--UGGGGG-AGGAUGu -5'
14209 3' -59.3 NC_003521.1 + 168751 0.68 0.764238
Target:  5'- aCGGCCUGG-UGGuCCgCCUCCUGuCGg -3'
miRNA:   3'- cGCCGGGCCuACUuGGgGGAGGAU-GU- -5'
14209 3' -59.3 NC_003521.1 + 203433 0.68 0.755221
Target:  5'- -aGGCCCGGGc--GCCCCCgccgCCUcgaACAc -3'
miRNA:   3'- cgCCGGGCCUacuUGGGGGa---GGA---UGU- -5'
14209 3' -59.3 NC_003521.1 + 75548 0.69 0.746107
Target:  5'- aGCGGCgCCGGcgGcggcuacgccAGCgCCCUCCUGu- -3'
miRNA:   3'- -CGCCG-GGCCuaC----------UUGgGGGAGGAUgu -5'
14209 3' -59.3 NC_003521.1 + 49813 0.7 0.689821
Target:  5'- -aGGCCUGGAUGAggcuGCCCacguCCaCCUGCGc -3'
miRNA:   3'- cgCCGGGCCUACU----UGGG----GGaGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 226914 0.67 0.82399
Target:  5'- cGCGGCCUccgc-GGCCCCCUCC-GCGc -3'
miRNA:   3'- -CGCCGGGccuacUUGGGGGAGGaUGU- -5'
14209 3' -59.3 NC_003521.1 + 101154 0.67 0.82399
Target:  5'- cGCGGCgCGGucUGcguCCCUCUCCU-CAg -3'
miRNA:   3'- -CGCCGgGCCu-ACuu-GGGGGAGGAuGU- -5'
14209 3' -59.3 NC_003521.1 + 113992 0.67 0.831958
Target:  5'- -gGGCaCCGGcUGcAACCCUCUCCUc-- -3'
miRNA:   3'- cgCCG-GGCCuAC-UUGGGGGAGGAugu -5'
14209 3' -59.3 NC_003521.1 + 211822 0.67 0.839763
Target:  5'- uGCGGUCCGGG-GGACCgUCUCgUucGCGu -3'
miRNA:   3'- -CGCCGGGCCUaCUUGGgGGAGgA--UGU- -5'
14209 3' -59.3 NC_003521.1 + 233721 0.67 0.846644
Target:  5'- aGCGGCCUGGAgaagGAggacgccGCCgCCgcgUCUGCu -3'
miRNA:   3'- -CGCCGGGCCUa---CU-------UGGgGGa--GGAUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.