miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14209 3' -59.3 NC_003521.1 + 67855 1.01 0.009191
Target:  5'- gGCGGCCCGG-UGAACCCCCUCCUACAc -3'
miRNA:   3'- -CGCCGGGCCuACUUGGGGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 153827 0.67 0.836661
Target:  5'- cGUGGCCCucaucaccGCCgCCUCCUACAu -3'
miRNA:   3'- -CGCCGGGccuacu--UGGgGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 167114 0.67 0.839763
Target:  5'- cGCGGCCCGGGUc-GCUgCgCUCC-ACGa -3'
miRNA:   3'- -CGCCGGGCCUAcuUGGgG-GAGGaUGU- -5'
14209 3' -59.3 NC_003521.1 + 166665 0.66 0.891911
Target:  5'- aGCGGCCagCGGcaccUGGGCCCCgUggcgcgccacgucguCCUGCAc -3'
miRNA:   3'- -CGCCGG--GCCu---ACUUGGGGgA---------------GGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 72982 0.72 0.555069
Target:  5'- aGCGGCCgCGGG-GGGCCuggCCgCUCCUGCu -3'
miRNA:   3'- -CGCCGG-GCCUaCUUGG---GG-GAGGAUGu -5'
14209 3' -59.3 NC_003521.1 + 106162 0.71 0.622299
Target:  5'- aCGGCCUGGAgc-ACUUCUUCCUGCGc -3'
miRNA:   3'- cGCCGGGCCUacuUGGGGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 173665 0.7 0.689821
Target:  5'- cGCGGgaCCCaGGGguacgGAGCCCCCgUCCUguGCGg -3'
miRNA:   3'- -CGCC--GGG-CCUa----CUUGGGGG-AGGA--UGU- -5'
14209 3' -59.3 NC_003521.1 + 128206 0.69 0.708837
Target:  5'- cUGGgCUGGGUguaGAGCCCCCUCUUGa- -3'
miRNA:   3'- cGCCgGGCCUA---CUUGGGGGAGGAUgu -5'
14209 3' -59.3 NC_003521.1 + 11937 0.68 0.781948
Target:  5'- -gGGCCCGGcUGGugCUCCUgCUGgGa -3'
miRNA:   3'- cgCCGGGCCuACUugGGGGAgGAUgU- -5'
14209 3' -59.3 NC_003521.1 + 122018 0.67 0.82399
Target:  5'- gGCaGCCCuGA--AACCCaCCUCCUACc -3'
miRNA:   3'- -CGcCGGGcCUacUUGGG-GGAGGAUGu -5'
14209 3' -59.3 NC_003521.1 + 94032 0.67 0.807593
Target:  5'- -aGGUCCGGAUcaucguCCgUCUCCUGCAu -3'
miRNA:   3'- cgCCGGGCCUAcuu---GGgGGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 23941 0.68 0.764238
Target:  5'- gGUGGCCUGGAUGccuggauguCCCgCUCC-ACGg -3'
miRNA:   3'- -CGCCGGGCCUACuu-------GGGgGAGGaUGU- -5'
14209 3' -59.3 NC_003521.1 + 149454 0.74 0.437403
Target:  5'- -gGGCCCGGGguucGGCCCCCUCCc--- -3'
miRNA:   3'- cgCCGGGCCUac--UUGGGGGAGGaugu -5'
14209 3' -59.3 NC_003521.1 + 188454 0.67 0.807593
Target:  5'- gGCGGUCaGGAUGAcgcGCCUCCgagCUACGa -3'
miRNA:   3'- -CGCCGGgCCUACU---UGGGGGag-GAUGU- -5'
14209 3' -59.3 NC_003521.1 + 124815 0.74 0.472203
Target:  5'- cGCGGCCUGGA--GACgCUgCUCCUGCGc -3'
miRNA:   3'- -CGCCGGGCCUacUUG-GGgGAGGAUGU- -5'
14209 3' -59.3 NC_003521.1 + 2950 0.68 0.755221
Target:  5'- uGUGGCCUGGAcauaGAgcGCCCUCUCCcggUACc -3'
miRNA:   3'- -CGCCGGGCCUa---CU--UGGGGGAGG---AUGu -5'
14209 3' -59.3 NC_003521.1 + 120974 0.67 0.815866
Target:  5'- -aGGCCCGGGUGGAUaUCCgacgcaccgCCUACc -3'
miRNA:   3'- cgCCGGGCCUACUUGgGGGa--------GGAUGu -5'
14209 3' -59.3 NC_003521.1 + 76076 0.67 0.839763
Target:  5'- cCGGCgaCCGcGAUGc-CCCCCUCCcGCGc -3'
miRNA:   3'- cGCCG--GGC-CUACuuGGGGGAGGaUGU- -5'
14209 3' -59.3 NC_003521.1 + 161935 0.73 0.526856
Target:  5'- -aGGCCCGcGUGGACCCCCUgacgcgCCUGg- -3'
miRNA:   3'- cgCCGGGCcUACUUGGGGGA------GGAUgu -5'
14209 3' -59.3 NC_003521.1 + 178588 0.7 0.64166
Target:  5'- cGCGcGUCCaGccGGGCgCCCUCCUGCAg -3'
miRNA:   3'- -CGC-CGGGcCuaCUUGgGGGAGGAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.