miRNA display CGI


Results 41 - 60 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14210 3' -54.4 NC_003521.1 + 91741 0.71 0.860244
Target:  5'- gUAGAggcUGAGGGCGu-GCGAgagCGCGGCc -3'
miRNA:   3'- aGUCU---ACUCCUGCucCGCUa--GCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 134505 0.71 0.867625
Target:  5'- gCGGAUGAGG-C-AGGCGAUgCGCacGGCc -3'
miRNA:   3'- aGUCUACUCCuGcUCCGCUA-GCG--UCG- -5'
14210 3' -54.4 NC_003521.1 + 197180 0.71 0.867625
Target:  5'- gCAGGgcugGAGG-CGGuGGCGGUCcCAGCg -3'
miRNA:   3'- aGUCUa---CUCCuGCU-CCGCUAGcGUCG- -5'
14210 3' -54.4 NC_003521.1 + 93900 0.71 0.867625
Target:  5'- -gAGGgcauGGGCGuGGCuGGUCGCGGCa -3'
miRNA:   3'- agUCUacu-CCUGCuCCG-CUAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 167556 0.71 0.867625
Target:  5'- gCAGAUGcuGAUGAuGGCGcagagGUUGCAGCg -3'
miRNA:   3'- aGUCUACucCUGCU-CCGC-----UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 40893 0.7 0.874804
Target:  5'- cCGGGgcgGGGGucaguuuaauaGCGAGGCGGggGCGGCc -3'
miRNA:   3'- aGUCUa--CUCC-----------UGCUCCGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 133713 0.7 0.874804
Target:  5'- -uGGAcGAGGACGAGGUGG--GCAGg -3'
miRNA:   3'- agUCUaCUCCUGCUCCGCUagCGUCg -5'
14210 3' -54.4 NC_003521.1 + 49667 0.7 0.874804
Target:  5'- -uGGAgaGGGGCcGGGCGAgCGCGGCg -3'
miRNA:   3'- agUCUacUCCUGcUCCGCUaGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 7725 0.7 0.874804
Target:  5'- uUUGGGUGGGGAgGGcGGCGcgaGCGGCg -3'
miRNA:   3'- -AGUCUACUCCUgCU-CCGCuagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 98300 0.7 0.874804
Target:  5'- cUCAGGgaaGAGGAgGAaGUGGUgGCGGCg -3'
miRNA:   3'- -AGUCUa--CUCCUgCUcCGCUAgCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 38855 0.7 0.888536
Target:  5'- -uGGcUGAGGACGAGGC-AUCGUucccGGUa -3'
miRNA:   3'- agUCuACUCCUGCUCCGcUAGCG----UCG- -5'
14210 3' -54.4 NC_003521.1 + 178303 0.7 0.888536
Target:  5'- -aAGAUGAGGuccuGCGGGGUGAugaUCaCGGCg -3'
miRNA:   3'- agUCUACUCC----UGCUCCGCU---AGcGUCG- -5'
14210 3' -54.4 NC_003521.1 + 5405 0.7 0.888536
Target:  5'- cUCGGGggccucgcccGAGGACGAGGCGGagGaauCGGCg -3'
miRNA:   3'- -AGUCUa---------CUCCUGCUCCGCUagC---GUCG- -5'
14210 3' -54.4 NC_003521.1 + 239082 0.7 0.888536
Target:  5'- -uGGcUGAGGACGAGGC-AUCGUucccGGUa -3'
miRNA:   3'- agUCuACUCCUGCUCCGcUAGCG----UCG- -5'
14210 3' -54.4 NC_003521.1 + 170298 0.7 0.893139
Target:  5'- cCGGccGAGcGCGAGGCGGUCacgucgguguuuaaGCGGCu -3'
miRNA:   3'- aGUCuaCUCcUGCUCCGCUAG--------------CGUCG- -5'
14210 3' -54.4 NC_003521.1 + 46071 0.7 0.895079
Target:  5'- -gGGAUGAGGucGCGAcgcccGGCG-UCGCAGa -3'
miRNA:   3'- agUCUACUCC--UGCU-----CCGCuAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 104443 0.7 0.895079
Target:  5'- gCGGccGAGGugGAGuGUaggaaGUCGCAGCg -3'
miRNA:   3'- aGUCuaCUCCugCUC-CGc----UAGCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 98622 0.7 0.895079
Target:  5'- --cGAgGAGGGCGAGaGCGGcgGCGGCg -3'
miRNA:   3'- aguCUaCUCCUGCUC-CGCUagCGUCG- -5'
14210 3' -54.4 NC_003521.1 + 73522 0.7 0.895079
Target:  5'- aUguGGUGGGcGACGAGGauccGUCGCAGa -3'
miRNA:   3'- -AguCUACUC-CUGCUCCgc--UAGCGUCg -5'
14210 3' -54.4 NC_003521.1 + 43627 0.7 0.901403
Target:  5'- -----cGAGGACGAGGaGGagGCGGCg -3'
miRNA:   3'- agucuaCUCCUGCUCCgCUagCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.