miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14211 5' -53.3 NC_003521.1 + 66629 1.13 0.004637
Target:  5'- aAGAGGACUUGGUGAGCACCAUGACGCg -3'
miRNA:   3'- -UCUCCUGAACCACUCGUGGUACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 107441 0.8 0.439767
Target:  5'- ---aGACUUGGUGGGUAgCGUGACGCu -3'
miRNA:   3'- ucucCUGAACCACUCGUgGUACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 46034 0.77 0.60383
Target:  5'- gGGAGGAgUgag-GGGCGCCAUGACGUu -3'
miRNA:   3'- -UCUCCUgAaccaCUCGUGGUACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 218452 0.75 0.684769
Target:  5'- cGGAGGACaUGGccGGCACCAcgccgugGGCGCa -3'
miRNA:   3'- -UCUCCUGaACCacUCGUGGUa------CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 188118 0.75 0.724475
Target:  5'- cGGAGGACacacUGGUGgagcggcuGGCACCGccGACGCu -3'
miRNA:   3'- -UCUCCUGa---ACCAC--------UCGUGGUa-CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 87091 0.74 0.753465
Target:  5'- uGGuGGGCcacGGUGGGCAUCGUGcCGCu -3'
miRNA:   3'- -UCuCCUGaa-CCACUCGUGGUACuGCG- -5'
14211 5' -53.3 NC_003521.1 + 212736 0.74 0.772282
Target:  5'- cAGAGGA--UGGUGGcCACCAacgUGGCGCu -3'
miRNA:   3'- -UCUCCUgaACCACUcGUGGU---ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 145334 0.72 0.832997
Target:  5'- cGAGGGCcUGGUuaagacgcuggucGAGUGCCAcgUGAUGCa -3'
miRNA:   3'- uCUCCUGaACCA-------------CUCGUGGU--ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 100166 0.72 0.865201
Target:  5'- uGAGGuCgUUGGgguaGGGCGCCA-GGCGCa -3'
miRNA:   3'- uCUCCuG-AACCa---CUCGUGGUaCUGCG- -5'
14211 5' -53.3 NC_003521.1 + 174228 0.71 0.872546
Target:  5'- --uGGGgUUGGcGAGCgAUCAUGACGCu -3'
miRNA:   3'- ucuCCUgAACCaCUCG-UGGUACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 35 0.71 0.87968
Target:  5'- gGGGGGugUuuuUGGcggggGGGCACUAaauUGGCGCa -3'
miRNA:   3'- -UCUCCugA---ACCa----CUCGUGGU---ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 240584 0.71 0.87968
Target:  5'- gGGGGGugUuuuUGGcggggGGGCACUAaauUGGCGCa -3'
miRNA:   3'- -UCUCCugA---ACCa----CUCGUGGU---ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 40357 0.71 0.87968
Target:  5'- gGGGGGugUuuuUGGcggggGGGCACUAaauUGGCGCa -3'
miRNA:   3'- -UCUCCugA---ACCa----CUCGUGGU---ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 102015 0.71 0.893293
Target:  5'- -cAGGGCgUGGuUGAGCACCugggccacGGCGCg -3'
miRNA:   3'- ucUCCUGaACC-ACUCGUGGua------CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 79027 0.71 0.893293
Target:  5'- uGGAGGuCUUGGUGgccGGCGugacagaCAUGGCGUa -3'
miRNA:   3'- -UCUCCuGAACCAC---UCGUg------GUACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 5642 0.71 0.893293
Target:  5'- -cAGGGCgUGG-GAuucCACCAUGACGCg -3'
miRNA:   3'- ucUCCUGaACCaCUc--GUGGUACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 165449 0.71 0.899127
Target:  5'- cGAGGGg-UGGcaggccuUGAGCACCAgGugGCg -3'
miRNA:   3'- uCUCCUgaACC-------ACUCGUGGUaCugCG- -5'
14211 5' -53.3 NC_003521.1 + 136092 0.71 0.899764
Target:  5'- uGGAGGGCUcGGUGuGCGUCAaGACGg -3'
miRNA:   3'- -UCUCCUGAaCCACuCGUGGUaCUGCg -5'
14211 5' -53.3 NC_003521.1 + 198946 0.7 0.906008
Target:  5'- uGAGGcagUGGagguUGGGCACCA-GGCGCg -3'
miRNA:   3'- uCUCCugaACC----ACUCGUGGUaCUGCG- -5'
14211 5' -53.3 NC_003521.1 + 133717 0.7 0.923347
Target:  5'- cGAGGACgaGGUGGGCAggA-GAUGCu -3'
miRNA:   3'- uCUCCUGaaCCACUCGUggUaCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.