Results 1 - 20 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14211 | 5' | -53.3 | NC_003521.1 | + | 212566 | 0.69 | 0.951714 |
Target: 5'- aGGGGGAggUGGUGAGagcgguguaaACCAUGAUcaucaGCa -3' miRNA: 3'- -UCUCCUgaACCACUCg---------UGGUACUG-----CG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 165449 | 0.71 | 0.899127 |
Target: 5'- cGAGGGg-UGGcaggccuUGAGCACCAgGugGCg -3' miRNA: 3'- uCUCCUgaACC-------ACUCGUGGUaCugCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 136092 | 0.71 | 0.899764 |
Target: 5'- uGGAGGGCUcGGUGuGCGUCAaGACGg -3' miRNA: 3'- -UCUCCUGAaCCACuCGUGGUaCUGCg -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 133717 | 0.7 | 0.923347 |
Target: 5'- cGAGGACgaGGUGGGCAggA-GAUGCu -3' miRNA: 3'- uCUCCUGaaCCACUCGUggUaCUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 52414 | 0.7 | 0.928659 |
Target: 5'- cGGAGGAUggGaGUGGGguCCAUcgcGugGCg -3' miRNA: 3'- -UCUCCUGaaC-CACUCguGGUA---CugCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 188364 | 0.69 | 0.947565 |
Target: 5'- uGAGGGCgUUGGaaGAGCugCucugcGACGCg -3' miRNA: 3'- uCUCCUG-AACCa-CUCGugGua---CUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 228735 | 0.69 | 0.951714 |
Target: 5'- --cGGGCUgcgUGGUGAGCAgCGgcguGCGCa -3' miRNA: 3'- ucuCCUGA---ACCACUCGUgGUac--UGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 105156 | 0.69 | 0.951714 |
Target: 5'- -cAGGACgaggUGGUGAcGaCGCCGccGACGCu -3' miRNA: 3'- ucUCCUGa---ACCACU-C-GUGGUa-CUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 166175 | 0.69 | 0.951714 |
Target: 5'- cAGAGGGg--GGUucAGC-CCGUGACGCa -3' miRNA: 3'- -UCUCCUgaaCCAc-UCGuGGUACUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 102015 | 0.71 | 0.893293 |
Target: 5'- -cAGGGCgUGGuUGAGCACCugggccacGGCGCg -3' miRNA: 3'- ucUCCUGaACC-ACUCGUGGua------CUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 79027 | 0.71 | 0.893293 |
Target: 5'- uGGAGGuCUUGGUGgccGGCGugacagaCAUGGCGUa -3' miRNA: 3'- -UCUCCuGAACCAC---UCGUg------GUACUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 240584 | 0.71 | 0.87968 |
Target: 5'- gGGGGGugUuuuUGGcggggGGGCACUAaauUGGCGCa -3' miRNA: 3'- -UCUCCugA---ACCa----CUCGUGGU---ACUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 46034 | 0.77 | 0.60383 |
Target: 5'- gGGAGGAgUgag-GGGCGCCAUGACGUu -3' miRNA: 3'- -UCUCCUgAaccaCUCGUGGUACUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 218452 | 0.75 | 0.684769 |
Target: 5'- cGGAGGACaUGGccGGCACCAcgccgugGGCGCa -3' miRNA: 3'- -UCUCCUGaACCacUCGUGGUa------CUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 188118 | 0.75 | 0.724475 |
Target: 5'- cGGAGGACacacUGGUGgagcggcuGGCACCGccGACGCu -3' miRNA: 3'- -UCUCCUGa---ACCAC--------UCGUGGUa-CUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 212736 | 0.74 | 0.772282 |
Target: 5'- cAGAGGA--UGGUGGcCACCAacgUGGCGCu -3' miRNA: 3'- -UCUCCUgaACCACUcGUGGU---ACUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 145334 | 0.72 | 0.832997 |
Target: 5'- cGAGGGCcUGGUuaagacgcuggucGAGUGCCAcgUGAUGCa -3' miRNA: 3'- uCUCCUGaACCA-------------CUCGUGGU--ACUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 100166 | 0.72 | 0.865201 |
Target: 5'- uGAGGuCgUUGGgguaGGGCGCCA-GGCGCa -3' miRNA: 3'- uCUCCuG-AACCa---CUCGUGGUaCUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 174228 | 0.71 | 0.872546 |
Target: 5'- --uGGGgUUGGcGAGCgAUCAUGACGCu -3' miRNA: 3'- ucuCCUgAACCaCUCG-UGGUACUGCG- -5' |
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14211 | 5' | -53.3 | NC_003521.1 | + | 35 | 0.71 | 0.87968 |
Target: 5'- gGGGGGugUuuuUGGcggggGGGCACUAaauUGGCGCa -3' miRNA: 3'- -UCUCCugA---ACCa----CUCGUGGU---ACUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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