miRNA display CGI


Results 1 - 20 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14211 5' -53.3 NC_003521.1 + 35 0.71 0.87968
Target:  5'- gGGGGGugUuuuUGGcggggGGGCACUAaauUGGCGCa -3'
miRNA:   3'- -UCUCCugA---ACCa----CUCGUGGU---ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 883 0.66 0.98842
Target:  5'- uGAcGGAgcUGGaauaccaagccaUGGGCACCAucUGGCGCa -3'
miRNA:   3'- uCU-CCUgaACC------------ACUCGUGGU--ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 3970 0.69 0.932237
Target:  5'- cGGAGGACccg--GGGCACCGucagcgcggaggucUGGCGCg -3'
miRNA:   3'- -UCUCCUGaaccaCUCGUGGU--------------ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 5642 0.71 0.893293
Target:  5'- -cAGGGCgUGG-GAuucCACCAUGACGCg -3'
miRNA:   3'- ucUCCUGaACCaCUc--GUGGUACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 14785 0.69 0.940449
Target:  5'- cGAGGuGC-UGGUGcugcuggacugguucGGCGCCGUGuACGCc -3'
miRNA:   3'- uCUCC-UGaACCAC---------------UCGUGGUAC-UGCG- -5'
14211 5' -53.3 NC_003521.1 + 15129 0.67 0.979216
Target:  5'- cGAGGGCgccUGG-GAGCGCC-UGgaccccaACGCc -3'
miRNA:   3'- uCUCCUGa--ACCaCUCGUGGuAC-------UGCG- -5'
14211 5' -53.3 NC_003521.1 + 18548 0.67 0.977146
Target:  5'- -cGGGGCUc--UGGGCACCAUcACGCg -3'
miRNA:   3'- ucUCCUGAaccACUCGUGGUAcUGCG- -5'
14211 5' -53.3 NC_003521.1 + 20640 0.69 0.938578
Target:  5'- gAGAGccGCgcgcUGGUGGGCGCCuacgugaugaccGUGGCGCu -3'
miRNA:   3'- -UCUCc-UGa---ACCACUCGUGG------------UACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 24624 0.68 0.96282
Target:  5'- aGGAGGACcccgcgccGGUGcucAGCGCCuucguccUGGCGCu -3'
miRNA:   3'- -UCUCCUGaa------CCAC---UCGUGGu------ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 29070 0.66 0.991007
Target:  5'- --uGGcCUuccUGGUGGGCAUCGagcucauggUGGCGCa -3'
miRNA:   3'- ucuCCuGA---ACCACUCGUGGU---------ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 29990 0.69 0.955636
Target:  5'- cGGAGGGag-GGgacGAGCGCCAcgGACcGCu -3'
miRNA:   3'- -UCUCCUgaaCCa--CUCGUGGUa-CUG-CG- -5'
14211 5' -53.3 NC_003521.1 + 32723 0.68 0.96282
Target:  5'- uGGGGGgUUGGcGAcGcCACCAgcgGGCGCg -3'
miRNA:   3'- uCUCCUgAACCaCU-C-GUGGUa--CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 35209 0.66 0.98842
Target:  5'- cAGGGGGCgcgcgGGUcggaucGAGCGuCCucggGGCGCg -3'
miRNA:   3'- -UCUCCUGaa---CCA------CUCGU-GGua--CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 35916 0.67 0.981756
Target:  5'- cAGA-GAC-UGGUGGGCGCCugguccucaacgggGACGUa -3'
miRNA:   3'- -UCUcCUGaACCACUCGUGGua------------CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 36485 0.67 0.974673
Target:  5'- cGGAGGACgacgcUGaG-GGGUcgACCAUGGCGUc -3'
miRNA:   3'- -UCUCCUGa----AC-CaCUCG--UGGUACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 36943 0.66 0.985291
Target:  5'- uGGAGGACgaGGaagccGAGCugCccggcgaacAUGACGUg -3'
miRNA:   3'- -UCUCCUGaaCCa----CUCGugG---------UACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 39229 0.67 0.979438
Target:  5'- cGGGGACagcGGUG-GC-CCGcGGCGCg -3'
miRNA:   3'- uCUCCUGaa-CCACuCGuGGUaCUGCG- -5'
14211 5' -53.3 NC_003521.1 + 40357 0.71 0.87968
Target:  5'- gGGGGGugUuuuUGGcggggGGGCACUAaauUGGCGCa -3'
miRNA:   3'- -UCUCCugA---ACCa----CUCGUGGU---ACUGCG- -5'
14211 5' -53.3 NC_003521.1 + 42704 0.69 0.955636
Target:  5'- aAGAGGGCggagggaguucuUUGGgaggggGcAGCACCGUcaGACGCc -3'
miRNA:   3'- -UCUCCUG------------AACCa-----C-UCGUGGUA--CUGCG- -5'
14211 5' -53.3 NC_003521.1 + 46034 0.77 0.60383
Target:  5'- gGGAGGAgUgag-GGGCGCCAUGACGUu -3'
miRNA:   3'- -UCUCCUgAaccaCUCGUGGUACUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.