miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14228 3' -68.6 NC_003521.1 + 153024 0.66 0.462753
Target:  5'- -cGCUCCUG--GCCCaG-GCCGCCCGAg -3'
miRNA:   3'- gaCGGGGGCggCGGG-CaCGGCGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 3653 0.66 0.462753
Target:  5'- -gGCCgCCGCCGUCUGccucgGCgGCCgGGa -3'
miRNA:   3'- gaCGGgGGCGGCGGGCa----CGgCGGgCU- -5'
14228 3' -68.6 NC_003521.1 + 204236 0.66 0.48795
Target:  5'- -gGCCaCCCGCCGCCag-GCCaGUUCGc -3'
miRNA:   3'- gaCGG-GGGCGGCGGgcaCGG-CGGGCu -5'
14228 3' -68.6 NC_003521.1 + 130169 0.66 0.471077
Target:  5'- -cGCCCUgGCCuGCC--UGCCGCgCGAu -3'
miRNA:   3'- gaCGGGGgCGG-CGGgcACGGCGgGCU- -5'
14228 3' -68.6 NC_003521.1 + 203291 0.66 0.471077
Target:  5'- -cGaCCCCCGCUGCCCacccccaggacGUcGCUgauguccgcggGCCCGAa -3'
miRNA:   3'- gaC-GGGGGCGGCGGG-----------CA-CGG-----------CGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 50270 0.66 0.471077
Target:  5'- aCUGCCgcugcagccgggUCCGCCGCUgcUGCCGCCg-- -3'
miRNA:   3'- -GACGG------------GGGCGGCGGgcACGGCGGgcu -5'
14228 3' -68.6 NC_003521.1 + 140755 0.66 0.471077
Target:  5'- -gGCgCCCGCC-UCCGUGCCGggCGAu -3'
miRNA:   3'- gaCGgGGGCGGcGGGCACGGCggGCU- -5'
14228 3' -68.6 NC_003521.1 + 203 0.66 0.479477
Target:  5'- -gGCCggCCCGCCGCac--GCCGCCgCGGa -3'
miRNA:   3'- gaCGG--GGGCGGCGggcaCGGCGG-GCU- -5'
14228 3' -68.6 NC_003521.1 + 240752 0.66 0.479477
Target:  5'- -gGCCggCCCGCCGCac--GCCGCCgCGGa -3'
miRNA:   3'- gaCGG--GGGCGGCGggcaCGGCGG-GCU- -5'
14228 3' -68.6 NC_003521.1 + 240712 0.66 0.48795
Target:  5'- -aGUCCCCGCgaCGaCCC--GCCGgCCCGAa -3'
miRNA:   3'- gaCGGGGGCG--GC-GGGcaCGGC-GGGCU- -5'
14228 3' -68.6 NC_003521.1 + 141168 0.66 0.454505
Target:  5'- gCUGCCCCUuccCCGCCC-UGCUaCCCa- -3'
miRNA:   3'- -GACGGGGGc--GGCGGGcACGGcGGGcu -5'
14228 3' -68.6 NC_003521.1 + 41444 0.66 0.454505
Target:  5'- -cGaCCCCCGCCGCCgucuacaccaCGgugGUgGCCCa- -3'
miRNA:   3'- gaC-GGGGGCGGCGG----------GCa--CGgCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 118318 0.66 0.454505
Target:  5'- cCUGCCCgCCGCCGCguuggCCcUGCagaaccCGCCCa- -3'
miRNA:   3'- -GACGGG-GGCGGCG-----GGcACG------GCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 195997 0.66 0.471077
Target:  5'- -aGCCCCaggaGCUGUggCGUGUCGCCCu- -3'
miRNA:   3'- gaCGGGGg---CGGCGg-GCACGGCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 160346 0.66 0.505103
Target:  5'- -gGCCUCCGUCGUCgagggCGUcGCCGCCUu- -3'
miRNA:   3'- gaCGGGGGCGGCGG-----GCA-CGGCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 79683 0.66 0.454505
Target:  5'- -cGUCCgCGaCCGCCCGcgGCCGCgUUGAu -3'
miRNA:   3'- gaCGGGgGC-GGCGGGCa-CGGCG-GGCU- -5'
14228 3' -68.6 NC_003521.1 + 114094 0.66 0.462753
Target:  5'- -aGCCaugaUCGCCGaCCGcGCCGCCuCGGa -3'
miRNA:   3'- gaCGGg---GGCGGCgGGCaCGGCGG-GCU- -5'
14228 3' -68.6 NC_003521.1 + 132542 0.66 0.48795
Target:  5'- -cGCCaCCaCCGCCCucgGUGCCGCCg-- -3'
miRNA:   3'- gaCGGgGGcGGCGGG---CACGGCGGgcu -5'
14228 3' -68.6 NC_003521.1 + 163 0.66 0.48795
Target:  5'- -aGUCCCCGCgaCGaCCC--GCCGgCCCGAa -3'
miRNA:   3'- gaCGGGGGCG--GC-GGGcaCGGC-GGGCU- -5'
14228 3' -68.6 NC_003521.1 + 153059 0.66 0.479477
Target:  5'- -gGCCCCCagGCCuCCUccGCCGCCgGGg -3'
miRNA:   3'- gaCGGGGG--CGGcGGGcaCGGCGGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.