miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14228 3' -68.6 NC_003521.1 + 227185 0.71 0.244772
Target:  5'- -cGCCUCCGCCGCCCuucCCaGCCCa- -3'
miRNA:   3'- gaCGGGGGCGGCGGGcacGG-CGGGcu -5'
14228 3' -68.6 NC_003521.1 + 193187 0.72 0.219613
Target:  5'- gCUGCCgCCagaGCCGCCgucaCG-GCCGCCUGGa -3'
miRNA:   3'- -GACGG-GGg--CGGCGG----GCaCGGCGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 77490 0.72 0.224462
Target:  5'- -cGCUacaaCCGCCGCuaGUGCCGCUCGc -3'
miRNA:   3'- gaCGGg---GGCGGCGggCACGGCGGGCu -5'
14228 3' -68.6 NC_003521.1 + 222165 0.72 0.224462
Target:  5'- -cGCCCCCGUgGCcagcagguCCGUGCgGCCCc- -3'
miRNA:   3'- gaCGGGGGCGgCG--------GGCACGgCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 130120 0.71 0.232913
Target:  5'- uCUGCCCCugcgucgucggcggCGCCGCCgcUGCCGCCacCGAg -3'
miRNA:   3'- -GACGGGG--------------GCGGCGGgcACGGCGG--GCU- -5'
14228 3' -68.6 NC_003521.1 + 117463 0.71 0.232913
Target:  5'- -aGCCCCCGCCGCCuccuccacacccggCGacggGCCuGUCCGGc -3'
miRNA:   3'- gaCGGGGGCGGCGG--------------GCa---CGG-CGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 234350 0.71 0.239555
Target:  5'- gCUGCCggaCCUGCCuCCCGUGCCGUCa-- -3'
miRNA:   3'- -GACGG---GGGCGGcGGGCACGGCGGgcu -5'
14228 3' -68.6 NC_003521.1 + 226841 0.71 0.239555
Target:  5'- -cGCCCgCCGCCGCgCCGgGCagGCCCa- -3'
miRNA:   3'- gaCGGG-GGCGGCG-GGCaCGg-CGGGcu -5'
14228 3' -68.6 NC_003521.1 + 226926 0.71 0.239555
Target:  5'- -gGCCCCCuCCGCgCCGgGCCcCCCGGc -3'
miRNA:   3'- gaCGGGGGcGGCG-GGCaCGGcGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 134710 0.72 0.214854
Target:  5'- gUGCCCaCgGCCGCCaCGccCUGCCCGAg -3'
miRNA:   3'- gACGGG-GgCGGCGG-GCacGGCGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 117178 0.72 0.210183
Target:  5'- -aGCCuaaCCCGCCGUcgCUGccGCCGCCCGAg -3'
miRNA:   3'- gaCGG---GGGCGGCG--GGCa-CGGCGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 117113 0.72 0.205601
Target:  5'- -cGCCUCCGCCGCUCagccGCCGCCUc- -3'
miRNA:   3'- gaCGGGGGCGGCGGGca--CGGCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 32883 0.77 0.10113
Target:  5'- -cGCCCgCGCCGCCgGUGCUGCCg-- -3'
miRNA:   3'- gaCGGGgGCGGCGGgCACGGCGGgcu -5'
14228 3' -68.6 NC_003521.1 + 54038 0.75 0.130724
Target:  5'- uUGCCCCCGCCGCCgCcaccaccGCCGCCUc- -3'
miRNA:   3'- gACGGGGGCGGCGG-Gca-----CGGCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 124147 0.74 0.160683
Target:  5'- gCUGCCUCCGCCGCCgcUGCCGUgCa- -3'
miRNA:   3'- -GACGGGGGCGGCGGgcACGGCGgGcu -5'
14228 3' -68.6 NC_003521.1 + 92367 0.73 0.17989
Target:  5'- cCUGCCCguCCGCuCGCCCGcUGCCGUCg-- -3'
miRNA:   3'- -GACGGG--GGCG-GCGGGC-ACGGCGGgcu -5'
14228 3' -68.6 NC_003521.1 + 203442 0.73 0.192369
Target:  5'- -cGCCCCCGCCGCCUcgaacaccgcaGUcGCCGaccaguCCCGGc -3'
miRNA:   3'- gaCGGGGGCGGCGGG-----------CA-CGGC------GGGCU- -5'
14228 3' -68.6 NC_003521.1 + 74181 0.72 0.196695
Target:  5'- aCUGCgCCgCGgCGCCCGgcgcGCgGCCCGAc -3'
miRNA:   3'- -GACGgGG-GCgGCGGGCa---CGgCGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 134238 0.72 0.196695
Target:  5'- gCUGCCCgCGCCGCCCucgGCCagggugaCCCGGu -3'
miRNA:   3'- -GACGGGgGCGGCGGGca-CGGc------GGGCU- -5'
14228 3' -68.6 NC_003521.1 + 138480 0.72 0.196695
Target:  5'- uCUGCCaCCUGCCGCCCGUcuaccaGCUgaucaucacggGCCCGc -3'
miRNA:   3'- -GACGG-GGGCGGCGGGCA------CGG-----------CGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.