miRNA display CGI


Results 1 - 20 of 259 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14228 3' -68.6 NC_003521.1 + 52932 1.07 0.000566
Target:  5'- cCUGCCCCCGCCGCCCGUGCCGCCCGAg -3'
miRNA:   3'- -GACGGGGGCGGCGGGCACGGCGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 233089 0.82 0.040659
Target:  5'- -cGCCUCCGCCGCUCGcGCCGCCCu- -3'
miRNA:   3'- gaCGGGGGCGGCGGGCaCGGCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 94932 0.79 0.074304
Target:  5'- gCUGCUCCCGCCGCCggcggccucguCGUcggcGCCGCCCGc -3'
miRNA:   3'- -GACGGGGGCGGCGG-----------GCA----CGGCGGGCu -5'
14228 3' -68.6 NC_003521.1 + 103563 0.78 0.081735
Target:  5'- -gGCCCCCGCUcuGCCCGcUGCCGCCg-- -3'
miRNA:   3'- gaCGGGGGCGG--CGGGC-ACGGCGGgcu -5'
14228 3' -68.6 NC_003521.1 + 72400 0.77 0.092025
Target:  5'- -cGCCgCCGCgGCCC-UGCCGCCCGc -3'
miRNA:   3'- gaCGGgGGCGgCGGGcACGGCGGGCu -5'
14228 3' -68.6 NC_003521.1 + 128378 0.77 0.098777
Target:  5'- -cGCCCaCCaggGCCGCCUGgGCCGCCUGAg -3'
miRNA:   3'- gaCGGG-GG---CGGCGGGCaCGGCGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 32883 0.77 0.10113
Target:  5'- -cGCCCgCGCCGCCgGUGCUGCCg-- -3'
miRNA:   3'- gaCGGGgGCGGCGGgCACGGCGGgcu -5'
14228 3' -68.6 NC_003521.1 + 148872 0.76 0.105995
Target:  5'- -cGCCCUCGCCGCCaCGggguccGCCGCCgGGu -3'
miRNA:   3'- gaCGGGGGCGGCGG-GCa-----CGGCGGgCU- -5'
14228 3' -68.6 NC_003521.1 + 48461 0.76 0.11108
Target:  5'- -cGUCCCCcaacGCCGCCCGUGCgaGCaCCGAg -3'
miRNA:   3'- gaCGGGGG----CGGCGGGCACGg-CG-GGCU- -5'
14228 3' -68.6 NC_003521.1 + 166249 0.76 0.119136
Target:  5'- -cGCCgCgCCGCCGCuCCGUcGCCGCCCu- -3'
miRNA:   3'- gaCGG-G-GGCGGCG-GGCA-CGGCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 54038 0.75 0.130724
Target:  5'- uUGCCCCCGCCGCCgCcaccaccGCCGCCUc- -3'
miRNA:   3'- gACGGGGGCGGCGG-Gca-----CGGCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 61969 0.75 0.130724
Target:  5'- aCUGCCcgcugacuuuCCCGUCGCCCccgcGCCGCCUGAg -3'
miRNA:   3'- -GACGG----------GGGCGGCGGGca--CGGCGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 43334 0.74 0.153532
Target:  5'- aCUGCUCCgCGCCGUCCGgcccGCCGCgCGu -3'
miRNA:   3'- -GACGGGG-GCGGCGGGCa---CGGCGgGCu -5'
14228 3' -68.6 NC_003521.1 + 124147 0.74 0.160683
Target:  5'- gCUGCCUCCGCCGCCgcUGCCGUgCa- -3'
miRNA:   3'- -GACGGGGGCGGCGGgcACGGCGgGcu -5'
14228 3' -68.6 NC_003521.1 + 102110 0.73 0.175892
Target:  5'- -cGCaCCaCCaGCCaggcGCCCGUGCCGCCCa- -3'
miRNA:   3'- gaCG-GG-GG-CGG----CGGGCACGGCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 92367 0.73 0.17989
Target:  5'- cCUGCCCguCCGCuCGCCCGcUGCCGUCg-- -3'
miRNA:   3'- -GACGGG--GGCG-GCGGGC-ACGGCGGgcu -5'
14228 3' -68.6 NC_003521.1 + 148960 0.73 0.183968
Target:  5'- -cGCCgCCGCCGuCCUGguccGCCGCCCu- -3'
miRNA:   3'- gaCGGgGGCGGC-GGGCa---CGGCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 109707 0.73 0.187708
Target:  5'- gCUGUCCCuucccggcagccgCGCCGCCCc-GCCGUCCGGa -3'
miRNA:   3'- -GACGGGG-------------GCGGCGGGcaCGGCGGGCU- -5'
14228 3' -68.6 NC_003521.1 + 2361 0.73 0.192369
Target:  5'- -cGUCUCCGCCccGCCCGccgagGCCGCCCu- -3'
miRNA:   3'- gaCGGGGGCGG--CGGGCa----CGGCGGGcu -5'
14228 3' -68.6 NC_003521.1 + 203442 0.73 0.192369
Target:  5'- -cGCCCCCGCCGCCUcgaacaccgcaGUcGCCGaccaguCCCGGc -3'
miRNA:   3'- gaCGGGGGCGGCGGG-----------CA-CGGC------GGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.