miRNA display CGI


Results 61 - 80 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14235 5' -58.3 NC_003521.1 + 37058 0.69 0.718317
Target:  5'- gGACGCCGAaaACCGGCAgcugcUGgGCACc- -3'
miRNA:   3'- -CUGCGGCUcgUGGUCGU-----ACgCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 121034 0.69 0.727031
Target:  5'- cGGCGCCGAccucgucgccgcuGCGCCGGUcccagGUGUGCugGu -3'
miRNA:   3'- -CUGCGGCU-------------CGUGGUCG-----UACGCGugUu -5'
14235 5' -58.3 NC_003521.1 + 212289 0.69 0.727995
Target:  5'- --gGCCaGGGCgaagGCCGGCAUGgGCACGc -3'
miRNA:   3'- cugCGG-CUCG----UGGUCGUACgCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 28847 0.69 0.727995
Target:  5'- gGACGaCGAGCugCGGCG-GCGCGgCAc -3'
miRNA:   3'- -CUGCgGCUCGugGUCGUaCGCGU-GUu -5'
14235 5' -58.3 NC_003521.1 + 74118 0.69 0.727995
Target:  5'- cGACGCCcauGGGCGCCGuGCAggacgacgugGCGCGCc- -3'
miRNA:   3'- -CUGCGG---CUCGUGGU-CGUa---------CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 88664 0.69 0.731844
Target:  5'- cGAUGCUGAGCAUgAGCGaguaccgcgccgaacUGCuGCACGGg -3'
miRNA:   3'- -CUGCGGCUCGUGgUCGU---------------ACG-CGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 121840 0.69 0.731844
Target:  5'- uGAUGUCGGGCACguucaccaucuugagCGGCAUgGCGUACAc -3'
miRNA:   3'- -CUGCGGCUCGUG---------------GUCGUA-CGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 85221 0.68 0.734723
Target:  5'- cGGCGCC--GCGCCggacagagacauggGGCcgGCGCGCAAa -3'
miRNA:   3'- -CUGCGGcuCGUGG--------------UCGuaCGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 111931 0.68 0.736637
Target:  5'- cGACGCCGcccucgacuaccuGGCGCggCGGCAggaugagucuguUGCGCACAu -3'
miRNA:   3'- -CUGCGGC-------------UCGUG--GUCGU------------ACGCGUGUu -5'
14235 5' -58.3 NC_003521.1 + 166317 0.68 0.743311
Target:  5'- uGAUGCCGcucuGCuCCAGCAgcugcgcgaagucGCGCACAAa -3'
miRNA:   3'- -CUGCGGCu---CGuGGUCGUa------------CGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 181841 0.68 0.747104
Target:  5'- cACGCCGAcCACCAGUgccugacgGCGCGCu- -3'
miRNA:   3'- cUGCGGCUcGUGGUCGua------CGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 34375 0.68 0.747104
Target:  5'- gGGCGuuGcGCACCAGCAgguggugGCGCuCGGg -3'
miRNA:   3'- -CUGCggCuCGUGGUCGUa------CGCGuGUU- -5'
14235 5' -58.3 NC_003521.1 + 155565 0.68 0.747104
Target:  5'- cGCGCgGAGCggguaGCCAGUuauuUGCGCGCc- -3'
miRNA:   3'- cUGCGgCUCG-----UGGUCGu---ACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 111704 0.68 0.747104
Target:  5'- gGACGCCGAcguccaguccguGCGCCGGCAcGCcaccCACAGc -3'
miRNA:   3'- -CUGCGGCU------------CGUGGUCGUaCGc---GUGUU- -5'
14235 5' -58.3 NC_003521.1 + 142921 0.68 0.747104
Target:  5'- cGACGUCGGcGUugCAGCAgcgGCGguCAGg -3'
miRNA:   3'- -CUGCGGCU-CGugGUCGUa--CGCguGUU- -5'
14235 5' -58.3 NC_003521.1 + 186849 0.68 0.756519
Target:  5'- uGGCgGCCcAGCGgCGGCGUGCaGCACGg -3'
miRNA:   3'- -CUG-CGGcUCGUgGUCGUACG-CGUGUu -5'
14235 5' -58.3 NC_003521.1 + 233296 0.68 0.765827
Target:  5'- aGGCGUCGuucGCAaugccccaaaCAGCGUGCGCGCu- -3'
miRNA:   3'- -CUGCGGCu--CGUg---------GUCGUACGCGUGuu -5'
14235 5' -58.3 NC_003521.1 + 109875 0.68 0.765827
Target:  5'- cGGCGgCGGGgcCACCAGUAacUGCGUGCGAc -3'
miRNA:   3'- -CUGCgGCUC--GUGGUCGU--ACGCGUGUU- -5'
14235 5' -58.3 NC_003521.1 + 102828 0.68 0.765827
Target:  5'- cGACGCCGAGaucgACCuGCGcGCGgACAc -3'
miRNA:   3'- -CUGCGGCUCg---UGGuCGUaCGCgUGUu -5'
14235 5' -58.3 NC_003521.1 + 16497 0.68 0.765827
Target:  5'- cGACGCuaCGAGCACgGGC-UGCgGCGCu- -3'
miRNA:   3'- -CUGCG--GCUCGUGgUCGuACG-CGUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.