miRNA display CGI


Results 21 - 40 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 5' -68.1 NC_003521.1 + 148433 0.74 0.180166
Target:  5'- gGCCGCGCCgGCGGcuccaGgGgUGGCCGGu -3'
miRNA:   3'- -UGGCGCGGgCGCCag---CgCgGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 43836 0.74 0.183399
Target:  5'- cGCCGcCGgCCGCGGgcccgucacaggCGCcCCGGCCGGc -3'
miRNA:   3'- -UGGC-GCgGGCGCCa-----------GCGcGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 181199 0.74 0.188344
Target:  5'- cGCCuGCGagCCGCGGUCGcCGCCggGGCCGc -3'
miRNA:   3'- -UGG-CGCg-GGCGCCAGC-GCGG--CCGGCc -5'
14239 5' -68.1 NC_003521.1 + 22360 0.73 0.196847
Target:  5'- cACUGCGCCCaCGGcgUgGUGCCGGCCa- -3'
miRNA:   3'- -UGGCGCGGGcGCC--AgCGCGGCCGGcc -5'
14239 5' -68.1 NC_003521.1 + 110342 0.73 0.198587
Target:  5'- gGCCGCGCUCGCGGUguagcugggccagcaCGCGaccgaaaaacUCGGCCGu -3'
miRNA:   3'- -UGGCGCGGGCGCCA---------------GCGC----------GGCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 208093 0.73 0.201222
Target:  5'- uCCGCGCCCGCuGGUgGCGUC-GCCa- -3'
miRNA:   3'- uGGCGCGGGCG-CCAgCGCGGcCGGcc -5'
14239 5' -68.1 NC_003521.1 + 131077 0.73 0.205682
Target:  5'- gGCgGCGaCCGCGGcUCGCGCgGGCucCGGa -3'
miRNA:   3'- -UGgCGCgGGCGCC-AGCGCGgCCG--GCC- -5'
14239 5' -68.1 NC_003521.1 + 91096 0.73 0.205682
Target:  5'- gGCC-CGUCUGCGccUGCGCCGGUCGGg -3'
miRNA:   3'- -UGGcGCGGGCGCcaGCGCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 124477 0.73 0.205682
Target:  5'- cGCCGCGCUCGCGGUC-CGuCCGcGUCa- -3'
miRNA:   3'- -UGGCGCGGGCGCCAGcGC-GGC-CGGcc -5'
14239 5' -68.1 NC_003521.1 + 148820 0.73 0.210228
Target:  5'- cGCCGCGCCuCGCcGcucccgcuccguUCGCGCCGGaUCGGc -3'
miRNA:   3'- -UGGCGCGG-GCGcC------------AGCGCGGCC-GGCC- -5'
14239 5' -68.1 NC_003521.1 + 196433 0.73 0.210228
Target:  5'- cGCUGuCGCCCG-GGUCG-GCCGGCUGc -3'
miRNA:   3'- -UGGC-GCGGGCgCCAGCgCGGCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 156692 0.73 0.210228
Target:  5'- uUCGCGCUCGgGGaaaagGUGCUGGCCGGg -3'
miRNA:   3'- uGGCGCGGGCgCCag---CGCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 226073 0.73 0.21486
Target:  5'- -gCGCGCCC-CGGcCGCgGCCGGCCc- -3'
miRNA:   3'- ugGCGCGGGcGCCaGCG-CGGCCGGcc -5'
14239 5' -68.1 NC_003521.1 + 118204 0.73 0.21486
Target:  5'- gGCCGCcgaGCgCGCGGcCGcCGCCGucGCCGGg -3'
miRNA:   3'- -UGGCG---CGgGCGCCaGC-GCGGC--CGGCC- -5'
14239 5' -68.1 NC_003521.1 + 76385 0.73 0.21486
Target:  5'- gGCCGCGgCCGCGGUgGCGCugcuagcaccagCGGCgGu -3'
miRNA:   3'- -UGGCGCgGGCGCCAgCGCG------------GCCGgCc -5'
14239 5' -68.1 NC_003521.1 + 197860 0.73 0.21486
Target:  5'- --gGCGCCgGCgGGUCGCGCUcGCUGGg -3'
miRNA:   3'- uggCGCGGgCG-CCAGCGCGGcCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 32904 0.73 0.219102
Target:  5'- cGCCGUGCCCGCcgcccccggcguaGGUgGCGCCGGagagcccaaGGg -3'
miRNA:   3'- -UGGCGCGGGCG-------------CCAgCGCGGCCgg-------CC- -5'
14239 5' -68.1 NC_003521.1 + 164932 0.73 0.219578
Target:  5'- aACCGgGCCCcuccuccgGCGGcUCGCGUCG-CCGGa -3'
miRNA:   3'- -UGGCgCGGG--------CGCC-AGCGCGGCcGGCC- -5'
14239 5' -68.1 NC_003521.1 + 209532 0.73 0.219578
Target:  5'- cGCCGCuG-CCGCGGUuaUGCGCCcGGCgGGg -3'
miRNA:   3'- -UGGCG-CgGGCGCCA--GCGCGG-CCGgCC- -5'
14239 5' -68.1 NC_003521.1 + 80043 0.73 0.219578
Target:  5'- cCCGCGCCCGCGuG-C-CGCCGGCgGc -3'
miRNA:   3'- uGGCGCGGGCGC-CaGcGCGGCCGgCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.