miRNA display CGI


Results 1 - 20 of 346 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 5' -68.1 NC_003521.1 + 44051 1.09 0.000596
Target:  5'- uACCGCGCCCGCGGUCGCGCCGGCCGGg -3'
miRNA:   3'- -UGGCGCGGGCGCCAGCGCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 109487 0.8 0.068859
Target:  5'- -gCGCGCCaggcgcuccagcgaGUGGUCGCGCCGGCCGc -3'
miRNA:   3'- ugGCGCGGg-------------CGCCAGCGCGGCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 126960 0.79 0.078627
Target:  5'- cGCCGCGgaaCCCGCGccGUCGuCGCCGGCCGc -3'
miRNA:   3'- -UGGCGC---GGGCGC--CAGC-GCGGCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 174204 0.78 0.092707
Target:  5'- -aCGCGCCCacguuGgGGUCGCGCgGGUCGGg -3'
miRNA:   3'- ugGCGCGGG-----CgCCAGCGCGgCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 116885 0.77 0.109155
Target:  5'- -gCGCGgCUGCGGcggCGCGCCGGCgGGa -3'
miRNA:   3'- ugGCGCgGGCGCCa--GCGCGGCCGgCC- -5'
14239 5' -68.1 NC_003521.1 + 198754 0.77 0.109155
Target:  5'- uGCCGUGCUCGCuGGUCGCGCCGcucGUgGGc -3'
miRNA:   3'- -UGGCGCGGGCG-CCAGCGCGGC---CGgCC- -5'
14239 5' -68.1 NC_003521.1 + 172299 0.77 0.111718
Target:  5'- uGCCGcCGUCCGguguCGGUgGCGCCaGGCCGGu -3'
miRNA:   3'- -UGGC-GCGGGC----GCCAgCGCGG-CCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 77619 0.77 0.114336
Target:  5'- -gCGCGCCCGUGacgGCGCCGGCCGa -3'
miRNA:   3'- ugGCGCGGGCGCcagCGCGGCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 129996 0.77 0.114336
Target:  5'- cGCUGCGCCgGCGGcggCGCGCaaCGGCCGc -3'
miRNA:   3'- -UGGCGCGGgCGCCa--GCGCG--GCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 222106 0.76 0.124531
Target:  5'- cGCCGcCGCCaGCGGcagccacagccggaUCGCGCCGGCCa- -3'
miRNA:   3'- -UGGC-GCGGgCGCC--------------AGCGCGGCCGGcc -5'
14239 5' -68.1 NC_003521.1 + 148594 0.76 0.137122
Target:  5'- cGCgGCGCCCGuCGGgcccucacagcgcUCGuCGCgCGGCCGGg -3'
miRNA:   3'- -UGgCGCGGGC-GCC-------------AGC-GCG-GCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 17001 0.75 0.147155
Target:  5'- aGCagGCGCCCGCGGUgGCGgCGGCgcaGGc -3'
miRNA:   3'- -UGg-CGCGGGCGCCAgCGCgGCCGg--CC- -5'
14239 5' -68.1 NC_003521.1 + 222365 0.75 0.150531
Target:  5'- cGCCGCgcaGCCCGCGGUCGaagcgGCacaGGCCGc -3'
miRNA:   3'- -UGGCG---CGGGCGCCAGCg----CGg--CCGGCc -5'
14239 5' -68.1 NC_003521.1 + 14757 0.75 0.150531
Target:  5'- gGCCGCGgCCGgGG-CGCGCCuucguGGCCGa -3'
miRNA:   3'- -UGGCGCgGGCgCCaGCGCGG-----CCGGCc -5'
14239 5' -68.1 NC_003521.1 + 95149 0.75 0.161087
Target:  5'- gGCCGCGCCgacgGCaaggaGUCG-GCCGGCCGGg -3'
miRNA:   3'- -UGGCGCGGg---CGc----CAGCgCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 23074 0.75 0.164751
Target:  5'- cCCGCGUCUGUGGUgucUGCGUCcguGGCCGGg -3'
miRNA:   3'- uGGCGCGGGCGCCA---GCGCGG---CCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 104043 0.74 0.16849
Target:  5'- gACCGUgaGCCCGCuGUCGCGCagguaGGCCa- -3'
miRNA:   3'- -UGGCG--CGGGCGcCAGCGCGg----CCGGcc -5'
14239 5' -68.1 NC_003521.1 + 71 0.74 0.172305
Target:  5'- cGCgGCgGCgUGCGG-CGgGCCGGCCGGu -3'
miRNA:   3'- -UGgCG-CGgGCGCCaGCgCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 200299 0.74 0.172305
Target:  5'- cGCgGCgGCgUGCGG-CGgGCCGGCCGGu -3'
miRNA:   3'- -UGgCG-CGgGCGCCaGCgCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 240620 0.74 0.172305
Target:  5'- cGCgGCgGCgUGCGG-CGgGCCGGCCGGu -3'
miRNA:   3'- -UGgCG-CGgGCGCCaGCgCGGCCGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.