miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 5' -68.1 NC_003521.1 + 71 0.74 0.172305
Target:  5'- cGCgGCgGCgUGCGG-CGgGCCGGCCGGu -3'
miRNA:   3'- -UGgCG-CGgGCGCCaGCgCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 179 0.67 0.476656
Target:  5'- cGCCG-GCCCGaaacacGUC-CGaCCGGCCGGc -3'
miRNA:   3'- -UGGCgCGGGCgc----CAGcGC-GGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 436 0.67 0.46012
Target:  5'- gGCCaaGCCgGCGGUaa-GCCaGCCGGu -3'
miRNA:   3'- -UGGcgCGGgCGCCAgcgCGGcCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 674 0.67 0.485033
Target:  5'- gGCCGaCGCCaugagccaGCGcuuucCGCGCCcGCCGGg -3'
miRNA:   3'- -UGGC-GCGGg-------CGCca---GCGCGGcCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 1313 0.66 0.540168
Target:  5'- uACgGCGCCggcgaCGUGG-CGCGgcuguaucgguccaaCCGGCUGGg -3'
miRNA:   3'- -UGgCGCGG-----GCGCCaGCGC---------------GGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 2313 0.67 0.451968
Target:  5'- cUCGCaCCUGCuG-CGCGCCGGCCu- -3'
miRNA:   3'- uGGCGcGGGCGcCaGCGCGGCCGGcc -5'
14239 5' -68.1 NC_003521.1 + 2459 0.72 0.255128
Target:  5'- cCCGCGcCCCGCuaugGGUacgcgacgGCGCCGGCCa- -3'
miRNA:   3'- uGGCGC-GGGCG----CCAg-------CGCGGCCGGcc -5'
14239 5' -68.1 NC_003521.1 + 5687 0.68 0.397233
Target:  5'- cGCC-CGUCCGCGGggaacggGCGCCGucaCCGGg -3'
miRNA:   3'- -UGGcGCGGGCGCCag-----CGCGGCc--GGCC- -5'
14239 5' -68.1 NC_003521.1 + 5813 0.66 0.554297
Target:  5'- cCCGCGUCCGCGGagGCcagggggaccGCUaccGCUGGg -3'
miRNA:   3'- uGGCGCGGGCGCCagCG----------CGGc--CGGCC- -5'
14239 5' -68.1 NC_003521.1 + 6693 0.7 0.320325
Target:  5'- gGCCuGCGCCCGCGa--GCGCU-GCUGGg -3'
miRNA:   3'- -UGG-CGCGGGCGCcagCGCGGcCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 11593 0.66 0.501994
Target:  5'- uCCGCgGCCCGCgGGUC-CaCUGGCgGGu -3'
miRNA:   3'- uGGCG-CGGGCG-CCAGcGcGGCCGgCC- -5'
14239 5' -68.1 NC_003521.1 + 12125 0.68 0.435903
Target:  5'- cGCCGCGCUCcuuCGGgUGCGgCGGCCu- -3'
miRNA:   3'- -UGGCGCGGGc--GCCaGCGCgGCCGGcc -5'
14239 5' -68.1 NC_003521.1 + 13903 0.7 0.307599
Target:  5'- gGCCcgGCGCggagggggCCGCGGaggcCGCGCUGGCCGc -3'
miRNA:   3'- -UGG--CGCG--------GGCGCCa---GCGCGGCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 14469 0.66 0.527905
Target:  5'- cGCCGCuCCCGCGG-CGCuaCCcGCgGGg -3'
miRNA:   3'- -UGGCGcGGGCGCCaGCGc-GGcCGgCC- -5'
14239 5' -68.1 NC_003521.1 + 14757 0.75 0.150531
Target:  5'- gGCCGCGgCCGgGG-CGCGCCuucguGGCCGa -3'
miRNA:   3'- -UGGCGCgGGCgCCaGCGCGG-----CCGGCc -5'
14239 5' -68.1 NC_003521.1 + 15808 0.67 0.468351
Target:  5'- uGCUGCGCCgaGCGGcucaUCGUGCUGGgCa- -3'
miRNA:   3'- -UGGCGCGGg-CGCC----AGCGCGGCCgGcc -5'
14239 5' -68.1 NC_003521.1 + 16074 0.66 0.501994
Target:  5'- uGCCGgaGCCC-CGa-CGCGCUGGCCGc -3'
miRNA:   3'- -UGGCg-CGGGcGCcaGCGCGGCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 16251 0.66 0.554297
Target:  5'- uACCucaGCCUGCGGcUGCGCUGccGCUGGu -3'
miRNA:   3'- -UGGcg-CGGGCGCCaGCGCGGC--CGGCC- -5'
14239 5' -68.1 NC_003521.1 + 16735 0.66 0.501994
Target:  5'- uCgGCGaCCGcCGGcgcgCGCGCCcGCCGGa -3'
miRNA:   3'- uGgCGCgGGC-GCCa---GCGCGGcCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 17001 0.75 0.147155
Target:  5'- aGCagGCGCCCGCGGUgGCGgCGGCgcaGGc -3'
miRNA:   3'- -UGg-CGCGGGCGCCAgCGCgGCCGg--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.