miRNA display CGI


Results 1 - 20 of 346 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 5' -68.1 NC_003521.1 + 143048 0.66 0.510572
Target:  5'- uCCGCGaCCUggauggugGUGGUgGCGCCGGUggcgauacguCGGa -3'
miRNA:   3'- uGGCGC-GGG--------CGCCAgCGCGGCCG----------GCC- -5'
14239 5' -68.1 NC_003521.1 + 130491 0.66 0.51921
Target:  5'- cACCGCGagCGCGGcCGCGUCaugauGGCCc- -3'
miRNA:   3'- -UGGCGCggGCGCCaGCGCGG-----CCGGcc -5'
14239 5' -68.1 NC_003521.1 + 186626 0.66 0.51921
Target:  5'- cACCG-GCCagcaGCGGUCGgGCUGcuccuCCGGu -3'
miRNA:   3'- -UGGCgCGGg---CGCCAGCgCGGCc----GGCC- -5'
14239 5' -68.1 NC_003521.1 + 142576 0.66 0.510572
Target:  5'- cGCCGUGCCCGCcGUgGCcGCCcccGCCu- -3'
miRNA:   3'- -UGGCGCGGGCGcCAgCG-CGGc--CGGcc -5'
14239 5' -68.1 NC_003521.1 + 45643 0.66 0.511433
Target:  5'- cGCCGCcgGCuCCGCGGgguccgGCGCacacccgcuaucaggGGCCGGa -3'
miRNA:   3'- -UGGCG--CG-GGCGCCag----CGCGg--------------CCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 134718 0.66 0.518344
Target:  5'- gGCCGCcacGCCCugcccgaggccuuGCGGUUggugGUGaaGGCCGGg -3'
miRNA:   3'- -UGGCG---CGGG-------------CGCCAG----CGCggCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 180923 0.66 0.51921
Target:  5'- uACUGCGgCCGCucgauGGUgGCGCgGuGCCGu -3'
miRNA:   3'- -UGGCGCgGGCG-----CCAgCGCGgC-CGGCc -5'
14239 5' -68.1 NC_003521.1 + 140755 0.66 0.510572
Target:  5'- --gGCGCCCGCcucCGUGCCGGgCGa -3'
miRNA:   3'- uggCGCGGGCGccaGCGCGGCCgGCc -5'
14239 5' -68.1 NC_003521.1 + 18742 0.66 0.501994
Target:  5'- gAUCGUGgCgGCGGUgGCGCCGa-CGGg -3'
miRNA:   3'- -UGGCGCgGgCGCCAgCGCGGCcgGCC- -5'
14239 5' -68.1 NC_003521.1 + 11593 0.66 0.501994
Target:  5'- uCCGCgGCCCGCgGGUC-CaCUGGCgGGu -3'
miRNA:   3'- uGGCG-CGGGCG-CCAGcGcGGCCGgCC- -5'
14239 5' -68.1 NC_003521.1 + 200336 0.66 0.554297
Target:  5'- cGCUGCgGCgCCGUGG-CGCGCCG--CGGa -3'
miRNA:   3'- -UGGCG-CG-GGCGCCaGCGCGGCcgGCC- -5'
14239 5' -68.1 NC_003521.1 + 133390 0.66 0.501994
Target:  5'- cGCgGCgGUCCGCGcuuUCGCGUCGGCUcucaGGa -3'
miRNA:   3'- -UGgCG-CGGGCGCc--AGCGCGGCCGG----CC- -5'
14239 5' -68.1 NC_003521.1 + 190408 0.66 0.50114
Target:  5'- aACCGCgaGUCCGCGGagCGCGUCGacggcgaguaguaGCCGc -3'
miRNA:   3'- -UGGCG--CGGGCGCCa-GCGCGGC-------------CGGCc -5'
14239 5' -68.1 NC_003521.1 + 221643 0.66 0.501994
Target:  5'- aGCuCGcCGCCCGCGGUguaGCCaGGCCu- -3'
miRNA:   3'- -UG-GC-GCGGGCGCCAgcgCGG-CCGGcc -5'
14239 5' -68.1 NC_003521.1 + 74131 0.66 0.510572
Target:  5'- cGCCGUGCaggacgaCGUGG-CGCGCCacggGGCCc- -3'
miRNA:   3'- -UGGCGCGg------GCGCCaGCGCGG----CCGGcc -5'
14239 5' -68.1 NC_003521.1 + 240120 0.66 0.501994
Target:  5'- -gUGgGCgUGCGGUCGUcCCGGCgGGc -3'
miRNA:   3'- ugGCgCGgGCGCCAGCGcGGCCGgCC- -5'
14239 5' -68.1 NC_003521.1 + 187444 0.66 0.509712
Target:  5'- cGCCGCgGCCUGCuccugcucGGUcugucggccccucCGcCGCCGcGCCGGc -3'
miRNA:   3'- -UGGCG-CGGGCG--------CCA-------------GC-GCGGC-CGGCC- -5'
14239 5' -68.1 NC_003521.1 + 184618 0.66 0.527033
Target:  5'- uAUCGUGCgUGCGGUacagaccUGCGCCGucaCCGGc -3'
miRNA:   3'- -UGGCGCGgGCGCCA-------GCGCGGCc--GGCC- -5'
14239 5' -68.1 NC_003521.1 + 150916 0.66 0.51921
Target:  5'- -gCGCGCCCuuccaCGG-CGUGUgGGCCGa -3'
miRNA:   3'- ugGCGCGGGc----GCCaGCGCGgCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 209202 0.66 0.510572
Target:  5'- cACCGuCGgCCGCGGUgGCccuGCCaGCUGa -3'
miRNA:   3'- -UGGC-GCgGGCGCCAgCG---CGGcCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.