miRNA display CGI


Results 1 - 20 of 346 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14239 5' -68.1 NC_003521.1 + 130749 0.72 0.224385
Target:  5'- -aCGUGUCgGCGGgcgcgaGCGCCGcGCCGGg -3'
miRNA:   3'- ugGCGCGGgCGCCag----CGCGGC-CGGCC- -5'
14239 5' -68.1 NC_003521.1 + 124477 0.73 0.205682
Target:  5'- cGCCGCGCUCGCGGUC-CGuCCGcGUCa- -3'
miRNA:   3'- -UGGCGCGGGCGCCAGcGC-GGC-CGGcc -5'
14239 5' -68.1 NC_003521.1 + 131077 0.73 0.205682
Target:  5'- gGCgGCGaCCGCGGcUCGCGCgGGCucCGGa -3'
miRNA:   3'- -UGgCGCgGGCGCC-AGCGCGgCCG--GCC- -5'
14239 5' -68.1 NC_003521.1 + 196433 0.73 0.210228
Target:  5'- cGCUGuCGCCCG-GGUCG-GCCGGCUGc -3'
miRNA:   3'- -UGGC-GCGGGCgCCAGCgCGGCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 226073 0.73 0.21486
Target:  5'- -gCGCGCCC-CGGcCGCgGCCGGCCc- -3'
miRNA:   3'- ugGCGCGGGcGCCaGCG-CGGCCGGcc -5'
14239 5' -68.1 NC_003521.1 + 118204 0.73 0.21486
Target:  5'- gGCCGCcgaGCgCGCGGcCGcCGCCGucGCCGGg -3'
miRNA:   3'- -UGGCG---CGgGCGCCaGC-GCGGC--CGGCC- -5'
14239 5' -68.1 NC_003521.1 + 32904 0.73 0.219102
Target:  5'- cGCCGUGCCCGCcgcccccggcguaGGUgGCGCCGGagagcccaaGGg -3'
miRNA:   3'- -UGGCGCGGGCG-------------CCAgCGCGGCCgg-------CC- -5'
14239 5' -68.1 NC_003521.1 + 164932 0.73 0.219578
Target:  5'- aACCGgGCCCcuccuccgGCGGcUCGCGUCG-CCGGa -3'
miRNA:   3'- -UGGCgCGGG--------CGCC-AGCGCGGCcGGCC- -5'
14239 5' -68.1 NC_003521.1 + 209532 0.73 0.219578
Target:  5'- cGCCGCuG-CCGCGGUuaUGCGCCcGGCgGGg -3'
miRNA:   3'- -UGGCG-CgGGCGCCA--GCGCGG-CCGgCC- -5'
14239 5' -68.1 NC_003521.1 + 91096 0.73 0.205682
Target:  5'- gGCC-CGUCUGCGccUGCGCCGGUCGGg -3'
miRNA:   3'- -UGGcGCGGGCGCcaGCGCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 43836 0.74 0.183399
Target:  5'- cGCCGcCGgCCGCGGgcccgucacaggCGCcCCGGCCGGc -3'
miRNA:   3'- -UGGC-GCgGGCGCCa-----------GCGcGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 148433 0.74 0.180166
Target:  5'- gGCCGCGCCgGCGGcuccaGgGgUGGCCGGu -3'
miRNA:   3'- -UGGCGCGGgCGCCag---CgCgGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 126960 0.79 0.078627
Target:  5'- cGCCGCGgaaCCCGCGccGUCGuCGCCGGCCGc -3'
miRNA:   3'- -UGGCGC---GGGCGC--CAGC-GCGGCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 116885 0.77 0.109155
Target:  5'- -gCGCGgCUGCGGcggCGCGCCGGCgGGa -3'
miRNA:   3'- ugGCGCgGGCGCCa--GCGCGGCCGgCC- -5'
14239 5' -68.1 NC_003521.1 + 129996 0.77 0.114336
Target:  5'- cGCUGCGCCgGCGGcggCGCGCaaCGGCCGc -3'
miRNA:   3'- -UGGCGCGGgCGCCa--GCGCG--GCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 77619 0.77 0.114336
Target:  5'- -gCGCGCCCGUGacgGCGCCGGCCGa -3'
miRNA:   3'- ugGCGCGGGCGCcagCGCGGCCGGCc -5'
14239 5' -68.1 NC_003521.1 + 148594 0.76 0.137122
Target:  5'- cGCgGCGCCCGuCGGgcccucacagcgcUCGuCGCgCGGCCGGg -3'
miRNA:   3'- -UGgCGCGGGC-GCC-------------AGC-GCG-GCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 222365 0.75 0.150531
Target:  5'- cGCCGCgcaGCCCGCGGUCGaagcgGCacaGGCCGc -3'
miRNA:   3'- -UGGCG---CGGGCGCCAGCg----CGg--CCGGCc -5'
14239 5' -68.1 NC_003521.1 + 95149 0.75 0.161087
Target:  5'- gGCCGCGCCgacgGCaaggaGUCG-GCCGGCCGGg -3'
miRNA:   3'- -UGGCGCGGg---CGc----CAGCgCGGCCGGCC- -5'
14239 5' -68.1 NC_003521.1 + 200299 0.74 0.172305
Target:  5'- cGCgGCgGCgUGCGG-CGgGCCGGCCGGu -3'
miRNA:   3'- -UGgCG-CGgGCGCCaGCgCGGCCGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.