Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14252 | 3' | -56.4 | NC_003521.1 | + | 29067 | 1.11 | 0.003821 |
Target: 5'- gCCGGACAUCUCGGGCUACGCAGUGGAg -3' miRNA: 3'- -GGCCUGUAGAGCCCGAUGCGUCACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 162714 | 0.83 | 0.207512 |
Target: 5'- -aGGuguACAUCUCGGGCUGCGUGGUGGu -3' miRNA: 3'- ggCC---UGUAGAGCCCGAUGCGUCACCu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 21935 | 0.81 | 0.293174 |
Target: 5'- gCGGGCGgcCUCGGGCUGgaGCAGUGGGc -3' miRNA: 3'- gGCCUGUa-GAGCCCGAUg-CGUCACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 160317 | 0.72 | 0.741261 |
Target: 5'- aCGGcCAUCggagccgUGGGCgGCGCGGUGGc -3' miRNA: 3'- gGCCuGUAGa------GCCCGaUGCGUCACCu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 100245 | 0.71 | 0.786639 |
Target: 5'- gCCGGccGCGaaaucCUCGGGCgGCGCcugGGUGGAg -3' miRNA: 3'- -GGCC--UGUa----GAGCCCGaUGCG---UCACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 204863 | 0.71 | 0.759732 |
Target: 5'- cCCGGA--UCUCGGGC-ACGCAGg--- -3' miRNA: 3'- -GGCCUguAGAGCCCGaUGCGUCaccu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 213309 | 0.7 | 0.844609 |
Target: 5'- gUGGGCGcCUCGGGCcgcACGCcccccGUGGAg -3' miRNA: 3'- gGCCUGUaGAGCCCGa--UGCGu----CACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 92080 | 0.7 | 0.820694 |
Target: 5'- aCCGGGgGUCggGGGgUGCGCAG-GGc -3' miRNA: 3'- -GGCCUgUAGagCCCgAUGCGUCaCCu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 127862 | 0.7 | 0.803953 |
Target: 5'- gCGGcauguaguagcGCAUCUCGGGCggguCGCGGUaGGc -3' miRNA: 3'- gGCC-----------UGUAGAGCCCGau--GCGUCA-CCu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 167166 | 0.7 | 0.836806 |
Target: 5'- cUCGGGCGUCUUGgaGGCggcCGCGGcGGAg -3' miRNA: 3'- -GGCCUGUAGAGC--CCGau-GCGUCaCCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 131044 | 0.7 | 0.836806 |
Target: 5'- cCUGGGCGgcggCggCGGGCcucuggACGCGGUGGc -3' miRNA: 3'- -GGCCUGUa---Ga-GCCCGa-----UGCGUCACCu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 192667 | 0.69 | 0.859677 |
Target: 5'- uUGGGCGUCUUGGGCU-CGCcgauGUacacGGAg -3' miRNA: 3'- gGCCUGUAGAGCCCGAuGCGu---CA----CCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 222106 | 0.69 | 0.86693 |
Target: 5'- gCCGGcaGCGUCUCGaGGCgcUGCGCcG-GGAa -3' miRNA: 3'- -GGCC--UGUAGAGC-CCG--AUGCGuCaCCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 5547 | 0.69 | 0.876758 |
Target: 5'- gCGGcGCGUCguuccucccgguugCGGGCUcgGCGGUGGAa -3' miRNA: 3'- gGCC-UGUAGa-------------GCCCGAugCGUCACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 163651 | 0.69 | 0.864052 |
Target: 5'- cUCGGugcGCGUCUCGGuGCUGCGgagcugcucaacaAGUGGGu -3' miRNA: 3'- -GGCC---UGUAGAGCC-CGAUGCg------------UCACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 122689 | 0.69 | 0.859677 |
Target: 5'- gCCGGugAUCaUGGGCgucucgGCGgGGcUGGAg -3' miRNA: 3'- -GGCCugUAGaGCCCGa-----UGCgUC-ACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 120760 | 0.69 | 0.852235 |
Target: 5'- aCGGACcugaacGUCaaGGGgcaCUGCGCGGUGGGc -3' miRNA: 3'- gGCCUG------UAGagCCC---GAUGCGUCACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 105628 | 0.69 | 0.876758 |
Target: 5'- -aGGGCGUgCUCGGGCgugUGCGUgaagcccagcucgggGGUGGGc -3' miRNA: 3'- ggCCUGUA-GAGCCCG---AUGCG---------------UCACCU- -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 125822 | 0.69 | 0.88085 |
Target: 5'- gCCGuaaACGUCugcgcgUCGGGCU-CGCGGUGGu -3' miRNA: 3'- -GGCc--UGUAG------AGCCCGAuGCGUCACCu -5' |
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14252 | 3' | -56.4 | NC_003521.1 | + | 224408 | 0.68 | 0.887508 |
Target: 5'- gCCGGuACAcCUCgccggccaGGcGCUGCGUGGUGGGc -3' miRNA: 3'- -GGCC-UGUaGAG--------CC-CGAUGCGUCACCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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