miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14252 3' -56.4 NC_003521.1 + 240646 0.66 0.953753
Target:  5'- gUCGGACGUguUUCGGGCcggcgggucguCGCGG-GGAc -3'
miRNA:   3'- -GGCCUGUA--GAGCCCGau---------GCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 239793 0.67 0.946587
Target:  5'- gCCGGcCAUCU--GGCUGCGCGGcGuGAu -3'
miRNA:   3'- -GGCCuGUAGAgcCCGAUGCGUCaC-CU- -5'
14252 3' -56.4 NC_003521.1 + 228266 0.67 0.928158
Target:  5'- cCCGGGCAUCUCcagacGCUcgGCGUccuccacggcgaAGUGGAa -3'
miRNA:   3'- -GGCCUGUAGAGcc---CGA--UGCG------------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 224408 0.68 0.887508
Target:  5'- gCCGGuACAcCUCgccggccaGGcGCUGCGUGGUGGGc -3'
miRNA:   3'- -GGCC-UGUaGAG--------CC-CGAUGCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 222106 0.69 0.86693
Target:  5'- gCCGGcaGCGUCUCGaGGCgcUGCGCcG-GGAa -3'
miRNA:   3'- -GGCC--UGUAGAGC-CCG--AUGCGuCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 213309 0.7 0.844609
Target:  5'- gUGGGCGcCUCGGGCcgcACGCcccccGUGGAg -3'
miRNA:   3'- gGCCUGUaGAGCCCGa--UGCGu----CACCU- -5'
14252 3' -56.4 NC_003521.1 + 208572 0.67 0.946587
Target:  5'- gUauGACAUC-CGGGCcugACGCucgAGUGGGa -3'
miRNA:   3'- -GgcCUGUAGaGCCCGa--UGCG---UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 204863 0.71 0.759732
Target:  5'- cCCGGA--UCUCGGGC-ACGCAGg--- -3'
miRNA:   3'- -GGCCUguAGAGCCCGaUGCGUCaccu -5'
14252 3' -56.4 NC_003521.1 + 200325 0.66 0.953753
Target:  5'- gUCGGACGUguUUCGGGCcggcgggucguCGCGG-GGAc -3'
miRNA:   3'- -GGCCUGUA--GAGCCCGau---------GCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 198269 0.68 0.893958
Target:  5'- gCCGGACAgccagC-CGGGCguCGCGGaGGAc -3'
miRNA:   3'- -GGCCUGUa----GaGCCCGauGCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 197944 0.67 0.937809
Target:  5'- aCGGGCGcgcgCUUGaGCUGCGCgaugcccuGGUGGAa -3'
miRNA:   3'- gGCCUGUa---GAGCcCGAUGCG--------UCACCU- -5'
14252 3' -56.4 NC_003521.1 + 197387 0.67 0.941866
Target:  5'- uCCaGGGCcgCcgccgccuccucgUCGGGC-ACGCAGUaGGAa -3'
miRNA:   3'- -GG-CCUGuaG-------------AGCCCGaUGCGUCA-CCU- -5'
14252 3' -56.4 NC_003521.1 + 193463 0.66 0.961592
Target:  5'- uCCGGcuuCGUCUCGGGUUuuGUguUGGGg -3'
miRNA:   3'- -GGCCu--GUAGAGCCCGAugCGucACCU- -5'
14252 3' -56.4 NC_003521.1 + 193292 0.67 0.946587
Target:  5'- aCGGGCGUCggagUCGGcGCggGgGUGGUGGGc -3'
miRNA:   3'- gGCCUGUAG----AGCC-CGa-UgCGUCACCU- -5'
14252 3' -56.4 NC_003521.1 + 192667 0.69 0.859677
Target:  5'- uUGGGCGUCUUGGGCU-CGCcgauGUacacGGAg -3'
miRNA:   3'- gGCCUGUAGAGCCCGAuGCGu---CA----CCU- -5'
14252 3' -56.4 NC_003521.1 + 180466 0.66 0.964831
Target:  5'- uUGGucuCGUCcacgaauagCGGGCUGCGCAGguUGGc -3'
miRNA:   3'- gGCCu--GUAGa--------GCCCGAUGCGUC--ACCu -5'
14252 3' -56.4 NC_003521.1 + 175301 0.67 0.928158
Target:  5'- aCGGGgGUCUCGGGCcuaaGCAcGUGa- -3'
miRNA:   3'- gGCCUgUAGAGCCCGaug-CGU-CACcu -5'
14252 3' -56.4 NC_003521.1 + 167166 0.7 0.836806
Target:  5'- cUCGGGCGUCUUGgaGGCggcCGCGGcGGAg -3'
miRNA:   3'- -GGCCUGUAGAGC--CCGau-GCGUCaCCU- -5'
14252 3' -56.4 NC_003521.1 + 166636 0.66 0.961592
Target:  5'- gUCGGGCcgCgcgcCGGGCgccgcgGCGCAGcGGc -3'
miRNA:   3'- -GGCCUGuaGa---GCCCGa-----UGCGUCaCCu -5'
14252 3' -56.4 NC_003521.1 + 163651 0.69 0.864052
Target:  5'- cUCGGugcGCGUCUCGGuGCUGCGgagcugcucaacaAGUGGGu -3'
miRNA:   3'- -GGCC---UGUAGAGCC-CGAUGCg------------UCACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.