miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14258 5' -56.9 NC_003521.1 + 25805 1.1 0.003486
Target:  5'- cACGAGACGGCUCUGGCGGUGCGUUACg -3'
miRNA:   3'- -UGCUCUGCCGAGACCGCCACGCAAUG- -5'
14258 5' -56.9 NC_003521.1 + 47639 0.76 0.458053
Target:  5'- gUGAcGGCGGCUCUGGCGGcagcUGCGcaACa -3'
miRNA:   3'- uGCU-CUGCCGAGACCGCC----ACGCaaUG- -5'
14258 5' -56.9 NC_003521.1 + 150658 0.74 0.570916
Target:  5'- gACGaAGGCGGCUCUccGGCGGcgGCGccGCu -3'
miRNA:   3'- -UGC-UCUGCCGAGA--CCGCCa-CGCaaUG- -5'
14258 5' -56.9 NC_003521.1 + 165838 0.73 0.580706
Target:  5'- gGCGAGAUguccaggcaGGUgugCUGGCGGUGCGa--- -3'
miRNA:   3'- -UGCUCUG---------CCGa--GACCGCCACGCaaug -5'
14258 5' -56.9 NC_003521.1 + 35811 0.73 0.620148
Target:  5'- gGCGGcGugGGCgagaacCUGGCGGUGCGc--- -3'
miRNA:   3'- -UGCU-CugCCGa-----GACCGCCACGCaaug -5'
14258 5' -56.9 NC_003521.1 + 208940 0.73 0.630047
Target:  5'- gUGccGCGGC-CUGGCGGUGCGgUACc -3'
miRNA:   3'- uGCucUGCCGaGACCGCCACGCaAUG- -5'
14258 5' -56.9 NC_003521.1 + 168547 0.72 0.669583
Target:  5'- cGCGGcGGCGGCgCUGGCGGgcUGCGg--- -3'
miRNA:   3'- -UGCU-CUGCCGaGACCGCC--ACGCaaug -5'
14258 5' -56.9 NC_003521.1 + 102968 0.71 0.718298
Target:  5'- gGCGucGgGGCUCUGGCGGgGCGg--- -3'
miRNA:   3'- -UGCucUgCCGAGACCGCCaCGCaaug -5'
14258 5' -56.9 NC_003521.1 + 98260 0.71 0.718298
Target:  5'- gGCGGGcACGGCgagcCUGGCGG-GCGa--- -3'
miRNA:   3'- -UGCUC-UGCCGa---GACCGCCaCGCaaug -5'
14258 5' -56.9 NC_003521.1 + 38225 0.71 0.727867
Target:  5'- gGCGcaGGGCGGC-CUcGGCGG-GCGggGCg -3'
miRNA:   3'- -UGC--UCUGCCGaGA-CCGCCaCGCaaUG- -5'
14258 5' -56.9 NC_003521.1 + 238453 0.71 0.727867
Target:  5'- gGCGcaGGGCGGC-CUcGGCGG-GCGggGCg -3'
miRNA:   3'- -UGC--UCUGCCGaGA-CCGCCaCGCaaUG- -5'
14258 5' -56.9 NC_003521.1 + 117724 0.71 0.737358
Target:  5'- gGCGAgGACGG-UCUGGaGGUGCGcgUGCc -3'
miRNA:   3'- -UGCU-CUGCCgAGACCgCCACGCa-AUG- -5'
14258 5' -56.9 NC_003521.1 + 123563 0.71 0.746765
Target:  5'- cCGAcGACGGCggUGGCGGgaugGCGgcgGCg -3'
miRNA:   3'- uGCU-CUGCCGagACCGCCa---CGCaa-UG- -5'
14258 5' -56.9 NC_003521.1 + 162234 0.7 0.756077
Target:  5'- aGCGccGACGGCgCUGGCGGgguggGCGUcaacgggggUGCg -3'
miRNA:   3'- -UGCu-CUGCCGaGACCGCCa----CGCA---------AUG- -5'
14258 5' -56.9 NC_003521.1 + 151869 0.7 0.756077
Target:  5'- cGCGAGA-GGUUCUGGCGGcGCu---- -3'
miRNA:   3'- -UGCUCUgCCGAGACCGCCaCGcaaug -5'
14258 5' -56.9 NC_003521.1 + 91865 0.7 0.756077
Target:  5'- gGCGgaccaGGACGGCggcGGCGGUGCGa--- -3'
miRNA:   3'- -UGC-----UCUGCCGagaCCGCCACGCaaug -5'
14258 5' -56.9 NC_003521.1 + 32363 0.7 0.756077
Target:  5'- gGCGGGACGGggcUUUUGGUGGcGCGUgGCc -3'
miRNA:   3'- -UGCUCUGCC---GAGACCGCCaCGCAaUG- -5'
14258 5' -56.9 NC_003521.1 + 74899 0.7 0.765286
Target:  5'- cGCGAGACGGUggcGGCGGUGgaGUcgGCc -3'
miRNA:   3'- -UGCUCUGCCGagaCCGCCACg-CAa-UG- -5'
14258 5' -56.9 NC_003521.1 + 148436 0.7 0.765286
Target:  5'- cGCGccGGCGGCUCcaggggUGGcCGGUGCGUg-- -3'
miRNA:   3'- -UGCu-CUGCCGAG------ACC-GCCACGCAaug -5'
14258 5' -56.9 NC_003521.1 + 107064 0.7 0.774385
Target:  5'- gACGAGACGuuCUCcgGGCGGUGuCGUa-- -3'
miRNA:   3'- -UGCUCUGCc-GAGa-CCGCCAC-GCAaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.