miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14258 5' -56.9 NC_003521.1 + 19945 0.66 0.9416
Target:  5'- gGCGAGAucguggugaggUGGCcgggCUGGCGGUGauCGUgACc -3'
miRNA:   3'- -UGCUCU-----------GCCGa---GACCGCCAC--GCAaUG- -5'
14258 5' -56.9 NC_003521.1 + 25805 1.1 0.003486
Target:  5'- cACGAGACGGCUCUGGCGGUGCGUUACg -3'
miRNA:   3'- -UGCUCUGCCGAGACCGCCACGCAAUG- -5'
14258 5' -56.9 NC_003521.1 + 32363 0.7 0.756077
Target:  5'- gGCGGGACGGggcUUUUGGUGGcGCGUgGCc -3'
miRNA:   3'- -UGCUCUGCC---GAGACCGCCaCGCAaUG- -5'
14258 5' -56.9 NC_003521.1 + 35811 0.73 0.620148
Target:  5'- gGCGGcGugGGCgagaacCUGGCGGUGCGc--- -3'
miRNA:   3'- -UGCU-CugCCGa-----GACCGCCACGCaaug -5'
14258 5' -56.9 NC_003521.1 + 38225 0.71 0.727867
Target:  5'- gGCGcaGGGCGGC-CUcGGCGG-GCGggGCg -3'
miRNA:   3'- -UGC--UCUGCCGaGA-CCGCCaCGCaaUG- -5'
14258 5' -56.9 NC_003521.1 + 38455 0.69 0.84223
Target:  5'- gACGAuGAaaccgucugGGCUCUGGCGGUGgGcgccgGCg -3'
miRNA:   3'- -UGCU-CUg--------CCGAGACCGCCACgCaa---UG- -5'
14258 5' -56.9 NC_003521.1 + 44442 0.67 0.904889
Target:  5'- gUGAcGGCGGCUC-GGCGaUGCGagUACa -3'
miRNA:   3'- uGCU-CUGCCGAGaCCGCcACGCa-AUG- -5'
14258 5' -56.9 NC_003521.1 + 46373 0.66 0.945954
Target:  5'- cACGAcGCGGCUgugaggGGCgcggGGUGCGUgggGCg -3'
miRNA:   3'- -UGCUcUGCCGAga----CCG----CCACGCAa--UG- -5'
14258 5' -56.9 NC_003521.1 + 47639 0.76 0.458053
Target:  5'- gUGAcGGCGGCUCUGGCGGcagcUGCGcaACa -3'
miRNA:   3'- uGCU-CUGCCGAGACCGCC----ACGCaaUG- -5'
14258 5' -56.9 NC_003521.1 + 59629 0.67 0.910802
Target:  5'- gGCGAccGCGGCUCgcaGGCguuGGUGCGgcagACg -3'
miRNA:   3'- -UGCUc-UGCCGAGa--CCG---CCACGCaa--UG- -5'
14258 5' -56.9 NC_003521.1 + 74899 0.7 0.765286
Target:  5'- cGCGAGACGGUggcGGCGGUGgaGUcgGCc -3'
miRNA:   3'- -UGCUCUGCCGagaCCGCCACg-CAa-UG- -5'
14258 5' -56.9 NC_003521.1 + 77725 0.66 0.937025
Target:  5'- gGCGAcGGCGGC-CUcGGUGGgcgGCGUc-- -3'
miRNA:   3'- -UGCU-CUGCCGaGA-CCGCCa--CGCAaug -5'
14258 5' -56.9 NC_003521.1 + 78808 0.68 0.879077
Target:  5'- gACGAG-CGGCcCUGGUGGcGCcagucguaacgGUUACg -3'
miRNA:   3'- -UGCUCuGCCGaGACCGCCaCG-----------CAAUG- -5'
14258 5' -56.9 NC_003521.1 + 91865 0.7 0.756077
Target:  5'- gGCGgaccaGGACGGCggcGGCGGUGCGa--- -3'
miRNA:   3'- -UGC-----UCUGCCGagaCCGCCACGCaaug -5'
14258 5' -56.9 NC_003521.1 + 92019 0.67 0.898758
Target:  5'- gGCGcGGCGGCggcGGCGGUGgGUc-- -3'
miRNA:   3'- -UGCuCUGCCGagaCCGCCACgCAaug -5'
14258 5' -56.9 NC_003521.1 + 97272 0.67 0.898758
Target:  5'- aGCGAuGGCGGCUgCUgcucgucgccGGCGGcGCGcgUGCg -3'
miRNA:   3'- -UGCU-CUGCCGA-GA----------CCGCCaCGCa-AUG- -5'
14258 5' -56.9 NC_003521.1 + 98260 0.71 0.718298
Target:  5'- gGCGGGcACGGCgagcCUGGCGG-GCGa--- -3'
miRNA:   3'- -UGCUC-UGCCGa---GACCGCCaCGCaaug -5'
14258 5' -56.9 NC_003521.1 + 98629 0.69 0.817934
Target:  5'- gGCGAGAgCGGCggcGGCGGUagcgGCGUcgACg -3'
miRNA:   3'- -UGCUCU-GCCGagaCCGCCA----CGCAa-UG- -5'
14258 5' -56.9 NC_003521.1 + 99282 0.66 0.945954
Target:  5'- -aGAGGCGGUUCUGGCuguagaGG-GCGc--- -3'
miRNA:   3'- ugCUCUGCCGAGACCG------CCaCGCaaug -5'
14258 5' -56.9 NC_003521.1 + 99284 0.66 0.945954
Target:  5'- gACGucggagcGAUGGCUCcguuguugUGGUGGUGCGa--- -3'
miRNA:   3'- -UGCu------CUGCCGAG--------ACCGCCACGCaaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.