miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14258 5' -56.9 NC_003521.1 + 78808 0.68 0.879077
Target:  5'- gACGAG-CGGCcCUGGUGGcGCcagucguaacgGUUACg -3'
miRNA:   3'- -UGCUCuGCCGaGACCGCCaCG-----------CAAUG- -5'
14258 5' -56.9 NC_003521.1 + 173419 0.69 0.84223
Target:  5'- -gGAGGgGGCgcugCUGGUGGUGCa---- -3'
miRNA:   3'- ugCUCUgCCGa---GACCGCCACGcaaug -5'
14258 5' -56.9 NC_003521.1 + 120936 0.69 0.84223
Target:  5'- cGCGGcGGCGGCUCcGGCGaGgggcaggggGCGggGCg -3'
miRNA:   3'- -UGCU-CUGCCGAGaCCGC-Ca--------CGCaaUG- -5'
14258 5' -56.9 NC_003521.1 + 207440 0.68 0.84998
Target:  5'- -gGAGAgCGGCggCUGGCGGcgUGUGUgagugACg -3'
miRNA:   3'- ugCUCU-GCCGa-GACCGCC--ACGCAa----UG- -5'
14258 5' -56.9 NC_003521.1 + 196727 0.68 0.84998
Target:  5'- gGCGGcGACGGUggUGGCGGcgGCGccUGCa -3'
miRNA:   3'- -UGCU-CUGCCGagACCGCCa-CGCa-AUG- -5'
14258 5' -56.9 NC_003521.1 + 150531 0.68 0.857546
Target:  5'- aGCGGGAgccguggggucCGGCggUGGUGGUGCGgguggugGCg -3'
miRNA:   3'- -UGCUCU-----------GCCGagACCGCCACGCaa-----UG- -5'
14258 5' -56.9 NC_003521.1 + 150969 0.68 0.858292
Target:  5'- cGCGAcGCGGCgCUGGCGGccgacaucggcuacgGCGUcUACg -3'
miRNA:   3'- -UGCUcUGCCGaGACCGCCa--------------CGCA-AUG- -5'
14258 5' -56.9 NC_003521.1 + 138710 0.68 0.864921
Target:  5'- gGCGGcACgGGCgcuggCUGGUGGUGCGUccggaggguUACg -3'
miRNA:   3'- -UGCUcUG-CCGa----GACCGCCACGCA---------AUG- -5'
14258 5' -56.9 NC_003521.1 + 164693 0.68 0.869967
Target:  5'- gACGAGGcCGGCggCUGacgaagaagacgacGCGGUGCGgccUACc -3'
miRNA:   3'- -UGCUCU-GCCGa-GAC--------------CGCCACGCa--AUG- -5'
14258 5' -56.9 NC_003521.1 + 113110 0.69 0.84223
Target:  5'- -gGAG-CGGCUCUcgGGCcaGGUGCGcgACg -3'
miRNA:   3'- ugCUCuGCCGAGA--CCG--CCACGCaaUG- -5'
14258 5' -56.9 NC_003521.1 + 38455 0.69 0.84223
Target:  5'- gACGAuGAaaccgucugGGCUCUGGCGGUGgGcgccgGCg -3'
miRNA:   3'- -UGCU-CUg--------CCGAGACCGCCACgCaa---UG- -5'
14258 5' -56.9 NC_003521.1 + 193142 0.69 0.834301
Target:  5'- -aGAGGggaGGCUCaUGGCGGggGCGUcUGCu -3'
miRNA:   3'- ugCUCUg--CCGAG-ACCGCCa-CGCA-AUG- -5'
14258 5' -56.9 NC_003521.1 + 168547 0.72 0.669583
Target:  5'- cGCGGcGGCGGCgCUGGCGGgcUGCGg--- -3'
miRNA:   3'- -UGCU-CUGCCGaGACCGCC--ACGCaaug -5'
14258 5' -56.9 NC_003521.1 + 238453 0.71 0.727867
Target:  5'- gGCGcaGGGCGGC-CUcGGCGG-GCGggGCg -3'
miRNA:   3'- -UGC--UCUGCCGaGA-CCGCCaCGCaaUG- -5'
14258 5' -56.9 NC_003521.1 + 32363 0.7 0.756077
Target:  5'- gGCGGGACGGggcUUUUGGUGGcGCGUgGCc -3'
miRNA:   3'- -UGCUCUGCC---GAGACCGCCaCGCAaUG- -5'
14258 5' -56.9 NC_003521.1 + 91865 0.7 0.756077
Target:  5'- gGCGgaccaGGACGGCggcGGCGGUGCGa--- -3'
miRNA:   3'- -UGC-----UCUGCCGagaCCGCCACGCaaug -5'
14258 5' -56.9 NC_003521.1 + 148436 0.7 0.765286
Target:  5'- cGCGccGGCGGCUCcaggggUGGcCGGUGCGUg-- -3'
miRNA:   3'- -UGCu-CUGCCGAG------ACC-GCCACGCAaug -5'
14258 5' -56.9 NC_003521.1 + 107064 0.7 0.774385
Target:  5'- gACGAGACGuuCUCcgGGCGGUGuCGUa-- -3'
miRNA:   3'- -UGCUCUGCc-GAGa-CCGCCAC-GCAaug -5'
14258 5' -56.9 NC_003521.1 + 144747 0.69 0.817934
Target:  5'- gACGAGGagcugaccCGGCUgCUGGCGGUcUGggACg -3'
miRNA:   3'- -UGCUCU--------GCCGA-GACCGCCAcGCaaUG- -5'
14258 5' -56.9 NC_003521.1 + 105625 0.69 0.817934
Target:  5'- aGCaGGGCGuGCUCgGGCGuGUGCGUg-- -3'
miRNA:   3'- -UGcUCUGC-CGAGaCCGC-CACGCAaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.