miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14264 3' -46.6 NC_003521.1 + 21486 1.12 0.026219
Target:  5'- gCCUACAAGGACAAGCUGAUACUCAUGu -3'
miRNA:   3'- -GGAUGUUCCUGUUCGACUAUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 15863 0.78 0.90527
Target:  5'- gCUACGAGGAgacgGAGCUGGUGCUCuguAUGg -3'
miRNA:   3'- gGAUGUUCCUg---UUCGACUAUGAG---UAC- -5'
14264 3' -46.6 NC_003521.1 + 36602 0.77 0.929061
Target:  5'- cCCUGaucacCAAGGGCGGGCUG-UGCUCGUc -3'
miRNA:   3'- -GGAU-----GUUCCUGUUCGACuAUGAGUAc -5'
14264 3' -46.6 NC_003521.1 + 181923 0.73 0.989798
Target:  5'- uCCUGCGcauGGaGACGGGCUGcgACUCGc- -3'
miRNA:   3'- -GGAUGU---UC-CUGUUCGACuaUGAGUac -5'
14264 3' -46.6 NC_003521.1 + 229159 0.73 0.992237
Target:  5'- --cGCGGGGauagGCAGGCUGAUGUUCAUGu -3'
miRNA:   3'- ggaUGUUCC----UGUUCGACUAUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 184857 0.73 0.993269
Target:  5'- cCCUGCAcaucggcguGGugGGGCUGcacacgGUGCUCAUGc -3'
miRNA:   3'- -GGAUGUu--------CCugUUCGAC------UAUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 218924 0.72 0.99691
Target:  5'- aCUGCGucaGCAGGCUguaGAUGCUCAUGa -3'
miRNA:   3'- gGAUGUuccUGUUCGA---CUAUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 113065 0.71 0.997392
Target:  5'- aCUACGAGGAgAcGCUGcgGCUCu-- -3'
miRNA:   3'- gGAUGUUCCUgUuCGACuaUGAGuac -5'
14264 3' -46.6 NC_003521.1 + 208857 0.71 0.99781
Target:  5'- uUUugGGGGACAcaGGCgUGAUAuCUCAUGu -3'
miRNA:   3'- gGAugUUCCUGU--UCG-ACUAU-GAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 106263 0.71 0.998171
Target:  5'- cCCUACcuGGACGAGCUGcgcaucGC-CGUGg -3'
miRNA:   3'- -GGAUGuuCCUGUUCGACua----UGaGUAC- -5'
14264 3' -46.6 NC_003521.1 + 119843 0.71 0.998171
Target:  5'- uCCgACGAGGACGAGCUGGcggACcgCAa- -3'
miRNA:   3'- -GGaUGUUCCUGUUCGACUa--UGa-GUac -5'
14264 3' -46.6 NC_003521.1 + 63572 0.7 0.999156
Target:  5'- aCCUGgGuGGAUGAGCUGAUGCg---- -3'
miRNA:   3'- -GGAUgUuCCUGUUCGACUAUGaguac -5'
14264 3' -46.6 NC_003521.1 + 28157 0.69 0.999556
Target:  5'- gCUGCccgucuGGGGCAuGCUGAUACccugCAUGc -3'
miRNA:   3'- gGAUGu-----UCCUGUuCGACUAUGa---GUAC- -5'
14264 3' -46.6 NC_003521.1 + 94119 0.69 0.999646
Target:  5'- uCCUGacggAAGGACGAGCgcaccGUGCUCAg- -3'
miRNA:   3'- -GGAUg---UUCCUGUUCGac---UAUGAGUac -5'
14264 3' -46.6 NC_003521.1 + 151395 0.69 0.99972
Target:  5'- uUCUGCGGGGACGGGUaGggACggCGUGu -3'
miRNA:   3'- -GGAUGUUCCUGUUCGaCuaUGa-GUAC- -5'
14264 3' -46.6 NC_003521.1 + 202459 0.69 0.999779
Target:  5'- cCCUGCuagugcuGGACGAGCUGgGUGC-CGUc -3'
miRNA:   3'- -GGAUGuu-----CCUGUUCGAC-UAUGaGUAc -5'
14264 3' -46.6 NC_003521.1 + 2231 0.69 0.999779
Target:  5'- cCCUGCuagugcuGGACGAGCUGgGUGC-CGUc -3'
miRNA:   3'- -GGAUGuu-----CCUGUUCGAC-UAUGaGUAc -5'
14264 3' -46.6 NC_003521.1 + 59791 0.69 0.999828
Target:  5'- gCCUuccGCAAGGACAccgacacggcGCUGGaccgcgugcUGCUCAUGu -3'
miRNA:   3'- -GGA---UGUUCCUGUu---------CGACU---------AUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 181763 0.68 0.999866
Target:  5'- gCCgACGAGGACAacgAGCUGGagacggcGCUCAa- -3'
miRNA:   3'- -GGaUGUUCCUGU---UCGACUa------UGAGUac -5'
14264 3' -46.6 NC_003521.1 + 170864 0.68 0.999897
Target:  5'- uUCUccGCGGGGGCGGGCgcgGGUGgUCAg- -3'
miRNA:   3'- -GGA--UGUUCCUGUUCGa--CUAUgAGUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.