miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14264 3' -46.6 NC_003521.1 + 2231 0.69 0.999779
Target:  5'- cCCUGCuagugcuGGACGAGCUGgGUGC-CGUc -3'
miRNA:   3'- -GGAUGuu-----CCUGUUCGAC-UAUGaGUAc -5'
14264 3' -46.6 NC_003521.1 + 14375 0.66 0.999998
Target:  5'- gCCcACAAccuGGACGAGCUGGcgcgcUACggCGUGu -3'
miRNA:   3'- -GGaUGUU---CCUGUUCGACU-----AUGa-GUAC- -5'
14264 3' -46.6 NC_003521.1 + 15827 0.66 0.999997
Target:  5'- uCgUGCu-GGGCAAGUgcgUGGUGCUgGUGg -3'
miRNA:   3'- -GgAUGuuCCUGUUCG---ACUAUGAgUAC- -5'
14264 3' -46.6 NC_003521.1 + 15863 0.78 0.90527
Target:  5'- gCUACGAGGAgacgGAGCUGGUGCUCuguAUGg -3'
miRNA:   3'- gGAUGUUCCUg---UUCGACUAUGAG---UAC- -5'
14264 3' -46.6 NC_003521.1 + 16501 0.66 0.999998
Target:  5'- gCUACGAGcACGGGCUGcggcGCUCGg- -3'
miRNA:   3'- gGAUGUUCcUGUUCGACua--UGAGUac -5'
14264 3' -46.6 NC_003521.1 + 17525 0.66 0.999991
Target:  5'- gCUGCGAGGACGccauccGCUGcgACU-AUGg -3'
miRNA:   3'- gGAUGUUCCUGUu-----CGACuaUGAgUAC- -5'
14264 3' -46.6 NC_003521.1 + 18139 0.66 0.999997
Target:  5'- gCCgcacCGAGGuCGAGCcGcUGCUCAUGc -3'
miRNA:   3'- -GGau--GUUCCuGUUCGaCuAUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 21486 1.12 0.026219
Target:  5'- gCCUACAAGGACAAGCUGAUACUCAUGu -3'
miRNA:   3'- -GGAUGUUCCUGUUCGACUAUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 28157 0.69 0.999556
Target:  5'- gCUGCccgucuGGGGCAuGCUGAUACccugCAUGc -3'
miRNA:   3'- gGAUGu-----UCCUGUuCGACUAUGa---GUAC- -5'
14264 3' -46.6 NC_003521.1 + 35652 0.66 0.999997
Target:  5'- gCUGCGAGcGGCAGGCga--GCUCGa- -3'
miRNA:   3'- gGAUGUUC-CUGUUCGacuaUGAGUac -5'
14264 3' -46.6 NC_003521.1 + 36602 0.77 0.929061
Target:  5'- cCCUGaucacCAAGGGCGGGCUG-UGCUCGUc -3'
miRNA:   3'- -GGAU-----GUUCCUGUUCGACuAUGAGUAc -5'
14264 3' -46.6 NC_003521.1 + 48035 0.66 0.999995
Target:  5'- uCCgACAAGGGCAAGCccGUGCcgGUGg -3'
miRNA:   3'- -GGaUGUUCCUGUUCGacUAUGagUAC- -5'
14264 3' -46.6 NC_003521.1 + 49138 0.66 0.999998
Target:  5'- gCUGCGGGGACuguuGC-GAUugUCGc- -3'
miRNA:   3'- gGAUGUUCCUGuu--CGaCUAugAGUac -5'
14264 3' -46.6 NC_003521.1 + 59791 0.69 0.999828
Target:  5'- gCCUuccGCAAGGACAccgacacggcGCUGGaccgcgugcUGCUCAUGu -3'
miRNA:   3'- -GGA---UGUUCCUGUu---------CGACU---------AUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 63572 0.7 0.999156
Target:  5'- aCCUGgGuGGAUGAGCUGAUGCg---- -3'
miRNA:   3'- -GGAUgUuCCUGUUCGACUAUGaguac -5'
14264 3' -46.6 NC_003521.1 + 94119 0.69 0.999646
Target:  5'- uCCUGacggAAGGACGAGCgcaccGUGCUCAg- -3'
miRNA:   3'- -GGAUg---UUCCUGUUCGac---UAUGAGUac -5'
14264 3' -46.6 NC_003521.1 + 94203 0.67 0.999967
Target:  5'- cCCUugAAGacgacGACGGGCUcgugauaggGGUGCUCAUa -3'
miRNA:   3'- -GGAugUUC-----CUGUUCGA---------CUAUGAGUAc -5'
14264 3' -46.6 NC_003521.1 + 102392 0.66 0.999998
Target:  5'- --cGCGGGGACGAGUagugccccUGGUACUUg-- -3'
miRNA:   3'- ggaUGUUCCUGUUCG--------ACUAUGAGuac -5'
14264 3' -46.6 NC_003521.1 + 104953 0.67 0.99998
Target:  5'- gCUugGAGGAgcugacgacggaaGGGCUGAcguucccggUGCUCAUGg -3'
miRNA:   3'- gGAugUUCCUg------------UUCGACU---------AUGAGUAC- -5'
14264 3' -46.6 NC_003521.1 + 106212 0.68 0.999922
Target:  5'- cCCU-CGGGGAUguagAGGCUGAUGCcCAg- -3'
miRNA:   3'- -GGAuGUUCCUG----UUCGACUAUGaGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.