Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14264 | 3' | -46.6 | NC_003521.1 | + | 36602 | 0.77 | 0.929061 |
Target: 5'- cCCUGaucacCAAGGGCGGGCUG-UGCUCGUc -3' miRNA: 3'- -GGAU-----GUUCCUGUUCGACuAUGAGUAc -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 49138 | 0.66 | 0.999998 |
Target: 5'- gCUGCGGGGACuguuGC-GAUugUCGc- -3' miRNA: 3'- gGAUGUUCCUGuu--CGaCUAugAGUac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 35652 | 0.66 | 0.999997 |
Target: 5'- gCUGCGAGcGGCAGGCga--GCUCGa- -3' miRNA: 3'- gGAUGUUC-CUGUUCGacuaUGAGUac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 173740 | 0.66 | 0.999995 |
Target: 5'- gCUUGCcAGaGGCAGGCUGcUGCUCc-- -3' miRNA: 3'- -GGAUGuUC-CUGUUCGACuAUGAGuac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 116362 | 0.66 | 0.999993 |
Target: 5'- cCCgACGAGGcCGAGCUGcUGCUgccgcgcgaCGUGg -3' miRNA: 3'- -GGaUGUUCCuGUUCGACuAUGA---------GUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 172267 | 0.67 | 0.999986 |
Target: 5'- --aGCGGGGGCAcAGCUGGUGggugugggucuccUUCAUGu -3' miRNA: 3'- ggaUGUUCCUGU-UCGACUAU-------------GAGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 133715 | 0.67 | 0.999982 |
Target: 5'- --gACGAGGACGaggugggcAGgaGAUGCUCGg- -3' miRNA: 3'- ggaUGUUCCUGU--------UCgaCUAUGAGUac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 106212 | 0.68 | 0.999922 |
Target: 5'- cCCU-CGGGGAUguagAGGCUGAUGCcCAg- -3' miRNA: 3'- -GGAuGUUCCUG----UUCGACUAUGaGUac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 59791 | 0.69 | 0.999828 |
Target: 5'- gCCUuccGCAAGGACAccgacacggcGCUGGaccgcgugcUGCUCAUGu -3' miRNA: 3'- -GGA---UGUUCCUGUu---------CGACU---------AUGAGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 202459 | 0.69 | 0.999779 |
Target: 5'- cCCUGCuagugcuGGACGAGCUGgGUGC-CGUc -3' miRNA: 3'- -GGAUGuu-----CCUGUUCGAC-UAUGaGUAc -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 63572 | 0.7 | 0.999156 |
Target: 5'- aCCUGgGuGGAUGAGCUGAUGCg---- -3' miRNA: 3'- -GGAUgUuCCUGUUCGACUAUGaguac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 208857 | 0.71 | 0.99781 |
Target: 5'- uUUugGGGGACAcaGGCgUGAUAuCUCAUGu -3' miRNA: 3'- gGAugUUCCUGU--UCG-ACUAU-GAGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 218924 | 0.72 | 0.99691 |
Target: 5'- aCUGCGucaGCAGGCUguaGAUGCUCAUGa -3' miRNA: 3'- gGAUGUuccUGUUCGA---CUAUGAGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 229159 | 0.73 | 0.992237 |
Target: 5'- --cGCGGGGauagGCAGGCUGAUGUUCAUGu -3' miRNA: 3'- ggaUGUUCC----UGUUCGACUAUGAGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 106263 | 0.71 | 0.998171 |
Target: 5'- cCCUACcuGGACGAGCUGcgcaucGC-CGUGg -3' miRNA: 3'- -GGAUGuuCCUGUUCGACua----UGaGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 113065 | 0.71 | 0.997392 |
Target: 5'- aCUACGAGGAgAcGCUGcgGCUCu-- -3' miRNA: 3'- gGAUGUUCCUgUuCGACuaUGAGuac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 184857 | 0.73 | 0.993269 |
Target: 5'- cCCUGCAcaucggcguGGugGGGCUGcacacgGUGCUCAUGc -3' miRNA: 3'- -GGAUGUu--------CCugUUCGAC------UAUGAGUAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 181923 | 0.73 | 0.989798 |
Target: 5'- uCCUGCGcauGGaGACGGGCUGcgACUCGc- -3' miRNA: 3'- -GGAUGU---UC-CUGUUCGACuaUGAGUac -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 15863 | 0.78 | 0.90527 |
Target: 5'- gCUACGAGGAgacgGAGCUGGUGCUCuguAUGg -3' miRNA: 3'- gGAUGUUCCUg---UUCGACUAUGAG---UAC- -5' |
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14264 | 3' | -46.6 | NC_003521.1 | + | 14375 | 0.66 | 0.999998 |
Target: 5'- gCCcACAAccuGGACGAGCUGGcgcgcUACggCGUGu -3' miRNA: 3'- -GGaUGUU---CCUGUUCGACU-----AUGa-GUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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